[Debian-med-packaging] Bug#1131058: insilicoseq: autopkgtest regression with NumPy 2.4

[roehling at debian.org]

Source: insilicoseq
Version: 2.0.1-2
Severity: important
User: debian-python at lists.debian.org
Usertags: numpy2.4

Dear maintainer,

According to https://ci.debian.net data, your package insilicoseq has an
autopkgtest regression with numpy.

The following architectures failed: amd64, arm64.

Hopefully relevant excerpt from
https://ci.debian.net/packages/i/insilicoseq/unstable/amd64/69506600/
follows:

 86s test/test_bam.py::test_to_model FAILED                                   [ 23%]
 88s test/test_modeller.py::test_kde_qualities FAILED                         [ 65%]
 88s =================================== FAILURES ===================================
 88s E           numpy.linalg.LinAlgError: 1-th leading minor of the array is not positive definite
 88s E           numpy.linalg.LinAlgError: The data appears to lie in a lower-dimensional subspace of the space in which it is expressed. This has resulted in a singular data covariance matrix, which cannot be treated using the algorithms implemented in `gaussian_kde`. Consider performing principal component analysis / dimensionality reduction and using `gaussian_kde` with the transformed data.
 88s >               except np.linalg.linalg.LinAlgError:
 88s E               AttributeError: module 'numpy.linalg' has no attribute 'linalg'
 88s E           numpy.linalg.LinAlgError: 1-th leading minor of the array is not positive definite
 88s E           numpy.linalg.LinAlgError: The data appears to lie in a lower-dimensional subspace of the space in which it is expressed. This has resulted in a singular data covariance matrix, which cannot be treated using the algorithms implemented in `gaussian_kde`. Consider performing principal component analysis / dimensionality reduction and using `gaussian_kde` with the transformed data.
 88s >               except np.linalg.linalg.LinAlgError:
 88s E               AttributeError: module 'numpy.linalg' has no attribute 'linalg'
 88s FAILED test/test_bam.py::test_to_model - AttributeError: module 'numpy.linalg...
 88s FAILED test/test_modeller.py::test_kde_qualities - AttributeError: module 'nu...
 88s ============= 2 failed, 43 passed, 1 skipped, 7 warnings in 2.63s ==============
 89s run-unit-test        FAIL non-zero exit status 1
 89s run-unit-test        FAIL non-zero exit status 1