[Debian-pan-maintainers] Bug#1115144: tomwer: FTBFS: FAILED tomwer/core/process/reconstruction/tests/test_saaxis.py::TestSAAxisProcess::test
Santiago Vila
sanvila at debian.org
Sat Sep 13 17:29:40 BST 2025
Package: src:tomwer
Version: 1.4.8-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:tomwer, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer
* Building wheel...
Creating converter from 7 to 5
Creating converter from 5 to 7
[... snipped ...]
tomwer/core/utils/tests/test_image.py::test_shift_image[False-0.0-3.6-2] PASSED [ 42%]
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1 PASSED [ 43%]
tomwer/core/utils/tests/test_nxtomo.py::test_get_n_series PASSED [ 43%]
tomwer/core/utils/tests/test_scan_utils.py::test_format_output_location PASSED [ 44%]
tomwer/core/utils/tests/test_time.py::test_timer PASSED [ 45%]
tomwer/core/volume/tests/test_volumes.py::test_volume_data_parent_folder PASSED [ 45%]
tomwer/core/volume/tests/test_volumes.py::test_raw_identifier PASSED [ 46%]
tomwer/core/process/control/tests/test_concatenate_nxtomos.py::test_concatenate_nx_tomo_task PASSED [ 47%]
tomwer/core/process/control/tests/test_concatenate_nxtomos.py::test_format_output_location PASSED [ 47%]
tomwer/core/process/control/tests/test_email.py::test__ls_tomo_obj PASSED [ 48%]
tomwer/core/process/control/tests/test_email.py::test_format_email_info PASSED [ 49%]
tomwer/core/process/control/tests/test_h52nx_process.py::test_h52nx_process_deduce_output_file_path PASSED [ 50%]
tomwer/core/process/control/tests/test_h52nx_process.py::test_edf2nx_process_deduce_output_file_path PASSED [ 50%]
tomwer/core/process/control/tests/test_h52nx_process.py::test_get_default_raw_data_output_file PASSED [ 51%]
tomwer/core/process/drac/tests/test_gallery.py::test_deduce_dataset_gallery_dir PASSED [ 52%]
tomwer/core/process/drac/tests/test_gallery.py::test_deduce_proposal_gallery_dir PASSED [ 52%]
tomwer/core/process/drac/tests/test_icat_processed_dataset.py::test_IcatReconstructedVolumeDataset[HDF5Volume-default] PASSED [ 53%]
tomwer/core/process/drac/tests/test_icat_processed_dataset.py::test_IcatReconstructedVolumeDataset[HDF5Volume-change_name] PASSED [ 54%]
tomwer/core/process/drac/tests/test_icat_processed_dataset.py::test_IcatReconstructedVolumeDataset[HDF5Volume-change_dir] PASSED [ 54%]
tomwer/core/process/drac/tests/test_icat_processed_dataset.py::test_IcatReconstructedVolumeDataset[EDFVolume-default] PASSED [ 55%]
tomwer/core/process/drac/tests/test_icat_processed_dataset.py::test_IcatReconstructedVolumeDataset[EDFVolume-change_name] PASSED [ 56%]
tomwer/core/process/drac/tests/test_icat_processed_dataset.py::test_IcatReconstructedVolumeDataset[EDFVolume-change_dir] PASSED [ 56%]
tomwer/core/process/drac/tests/test_icat_raw_dataset.py::test_IcatRawDataset PASSED [ 57%]
tomwer/core/process/drac/tests/test_icat_raw_dataset.py::test_select_angles PASSED [ 58%]
tomwer/core/process/edit/tests/test_darkflatpatch.py::TestDaarkFlatPatch::test PASSED [ 58%]
tomwer/core/process/edit/tests/test_imagekey_editor.py::TestImageKeyEditor::test PASSED [ 59%]
tomwer/core/process/edit/tests/test_imagekey_editor.py::test_ImageKeyUpgraderTask PASSED [ 60%]
tomwer/core/process/reconstruction/tests/test_axis.py::test_read_x_rotation_axis_pixel_position PASSED [ 60%]
tomwer/core/process/reconstruction/tests/test_axis_params.py::test_axis_resource PASSED [ 61%]
tomwer/core/process/reconstruction/tests/test_axis_params.py::test_AxisCalculationInput PASSED [ 62%]
tomwer/core/process/reconstruction/tests/test_darkref.py::test_quick_run_necessary_edf PASSED [ 63%]
tomwer/core/process/reconstruction/tests/test_darkref.py::test_quick_run_necessary_hdf5 PASSED [ 63%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-False-False-False] PASSED [ 64%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-False-True-False] PASSED [ 65%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-False-False-True] PASSED [ 65%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-False-True-True] PASSED [ 66%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-False-False-False] PASSED [ 67%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-False-True-False] PASSED [ 67%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-False-False-True] PASSED [ 68%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-False-True-True] PASSED [ 69%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-True-False-False] PASSED [ 69%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-True-True-False] PASSED [ 70%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-True-False-True] PASSED [ 71%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[False-True-True-True] PASSED [ 71%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-True-False-False] PASSED [ 72%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-True-True-False] PASSED [ 73%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-True-False-True] PASSED [ 73%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_register_and_copy_darks_and_flats[True-True-True-True] PASSED [ 74%]
tomwer/core/process/reconstruction/tests/test_darkref_copy.py::test_save_reduced_frames_to_be_copied PASSED [ 75%]
tomwer/core/process/reconstruction/tests/test_params_cache.py::test_cache PASSED [ 76%]
tomwer/core/process/reconstruction/tests/test_paramsbase.py::test_paramsbase PASSED [ 76%]
tomwer/core/process/reconstruction/tests/test_paramsbase.py::test_get_db_fromstr PASSED [ 77%]
tomwer/core/process/reconstruction/tests/test_paramsbase.py::test_basic_DKRFRP PASSED [ 78%]
tomwer/core/process/reconstruction/tests/test_paramsbase.py::test_ReconsParams_from_dict[DKRFRP] PASSED [ 78%]
tomwer/core/process/reconstruction/tests/test_paramsbase.py::test_ReconsParams_from_dict[AxisRP] PASSED [ 79%]
tomwer/core/process/reconstruction/tests/test_saaxis.py::TestScoreFunctions::test_img_contrast_std_score PASSED [ 80%]
tomwer/core/process/reconstruction/tests/test_saaxis.py::TestScoreFunctions::test_method_to_function PASSED [ 80%]
tomwer/core/process/reconstruction/tests/test_saaxis.py::TestSAAxisProcess::test FAILED [ 81%]
tomwer/core/process/reconstruction/tests/test_sadeltabeta.py::TestSADeltaBetaProcess::test PASSED [ 82%]
tomwer/core/process/reconstruction/tests/test_utils.py::test_cor_conversion PASSED [ 82%]
tomwer/core/process/script/tests/test_script.py::TestPythonScript::test PASSED [ 83%]
tomwer/core/process/stitching/tests/test_metadataholder.py::test_to_dict_from_dict PASSED [ 84%]
tomwer/core/process/visualization/tests/test_data_viewer.py::test_data_viewer PASSED [ 84%]
tomwer/core/process/visualization/tests/test_diff_viewer.py::test_diff_viewer PASSED [ 85%]
tomwer/core/process/visualization/tests/test_image_stack_viewer.py::test_image_stack_viewer PASSED [ 86%]
tomwer/core/process/visualization/tests/test_radio_stack.py::test_radio_stack PASSED [ 86%]
tomwer/core/process/visualization/tests/test_sample_moved.py::test_sample_moved PASSED [ 87%]
tomwer/core/process/visualization/tests/test_sinogram_viewer.py::test_sinogram_viewer PASSED [ 88%]
tomwer/core/process/visualization/tests/test_slice_stack.py::test_slice_stack PASSED [ 89%]
tomwer/core/process/visualization/tests/test_volume_viewer.py::test_volume_viewer PASSED [ 89%]
tomwer/core/process/reconstruction/nabu/test/test_castvolume.py::test_cast_volume_32bitstiff_to_16bits_tiff PASSED [ 90%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_recons_volume_identifier[YZ-scan0] PASSED [ 91%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_recons_volume_identifier[YZ-scan1] PASSED [ 91%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_recons_volume_identifier[XZ-scan0] PASSED [ 92%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_recons_volume_identifier[XZ-scan1] PASSED [ 93%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_recons_volume_identifier[XY-scan0] PASSED [ 93%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_recons_volume_identifier[XY-scan1] PASSED [ 94%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_multi_cor_recons_volume_identifier[scan0] PASSED [ 95%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_get_multi_cor_recons_volume_identifier[scan1] PASSED [ 95%]
tomwer/core/process/reconstruction/nabu/test/test_nabu_utils.py::test_nabu_std_err_has_error PASSED [ 96%]
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py::test_normalization[norm_setting0-expected_nabu_conf0] PASSED [ 97%]
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py::test_normalization[norm_setting1-expected_nabu_conf1] PASSED [ 97%]
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py::test_normalization[norm_setting2-expected_nabu_conf2] PASSED [ 98%]
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py::test_normalization[norm_setting3-expected_nabu_conf3] PASSED [ 99%]
tomwer/core/process/reconstruction/nabu/test/test_nabunormalization.py::test_normalization[norm_setting4-expected_nabu_conf4] PASSED [100%]
=================================== FAILURES ===================================
____________________________ TestSAAxisProcess.test ____________________________
name = b'/tmp/tmpnqvfdj7k/tmpnqvfdj7k_multi_cor_results/tomwer_saaxis.h5'
mode = 'a', userblock_size = None
fapl = <h5py._debian_h5py_serial.h5p.PropFAID object at 0x7f01f9446020>
fcpl = None, swmr = False
def make_fid(name, mode, userblock_size, fapl, fcpl=None, swmr=False):
""" Get a new FileID by opening or creating a file.
Also validates mode argument."""
if userblock_size is not None:
if mode in ('r', 'r+'):
raise ValueError("User block may only be specified "
"when creating a file")
try:
userblock_size = int(userblock_size)
except (TypeError, ValueError):
raise ValueError("User block size must be an integer")
if fcpl is None:
fcpl = h5p.create(h5p.FILE_CREATE)
fcpl.set_userblock(userblock_size)
if mode == 'r':
flags = h5f.ACC_RDONLY
if swmr and swmr_support:
flags |= h5f.ACC_SWMR_READ
fid = h5f.open(name, flags, fapl=fapl)
elif mode == 'r+':
fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
elif mode in ['w-', 'x']:
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
elif mode == 'w':
fid = h5f.create(name, h5f.ACC_TRUNC, fapl=fapl, fcpl=fcpl)
elif mode == 'a':
# Open in append mode (read/write).
# If that fails, create a new file only if it won't clobber an
# existing one (ACC_EXCL)
try:
> fid = h5f.open(name, h5f.ACC_RDWR, fapl=fapl)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py:250:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
h5py/_debian_h5py_serial/_objects.pyx:56: in h5py._debian_h5py_serial._objects.with_phil.wrapper
???
h5py/_debian_h5py_serial/_objects.pyx:57: in h5py._debian_h5py_serial._objects.with_phil.wrapper
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E FileNotFoundError: [Errno 2] Unable to synchronously open file (unable to open file: name = '/tmp/tmpnqvfdj7k/tmpnqvfdj7k_multi_cor_results/tomwer_saaxis.h5', errno = 2, error message = 'No such file or directory', flags = 1, o_flags = 2)
h5py/_debian_h5py_serial/h5f.pyx:102: FileNotFoundError
During handling of the above exception, another exception occurred:
self = <tomwer.core.process.reconstruction.tests.test_saaxis.TestSAAxisProcess testMethod=test>
def test(self):
process = SAAxisTask(
inputs={
"data": self.scan,
"sa_axis_params": self._default_saaxis_params.to_dict(),
"serialize_output_data": False,
}
)
self._default_saaxis_params.estimated_cor = 11
self._default_saaxis_params.research_width = 2
process = SAAxisTask(
inputs={
"data": self.scan,
"sa_axis_params": self._default_saaxis_params.to_dict(),
"serialize_output_data": False,
},
)
> process.run()
tomwer/core/process/reconstruction/tests/test_saaxis.py:83:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
tomwer/core/process/reconstruction/saaxis/saaxis.py:532: in run
self._process_end(scan=scan, cors_res=cors_res, score_rois=rois)
tomwer/core/process/reconstruction/saaxis/saaxis.py:581: in _process_end
self.save_results_to_disk(scan=scan)
tomwer/core/process/reconstruction/saaxis/saaxis.py:632: in save_results_to_disk
with HDF5File(saaxis_results_url.file_path(), mode="a") as h5f:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py:564: in __init__
fid = make_fid(name, mode, userblock_size, fapl, fcpl, swmr=swmr)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/_hl/files.py:264: in make_fid
fid = h5f.create(name, h5f.ACC_EXCL, fapl=fapl, fcpl=fcpl)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
h5py/_debian_h5py_serial/_objects.pyx:56: in h5py._debian_h5py_serial._objects.with_phil.wrapper
???
h5py/_debian_h5py_serial/_objects.pyx:57: in h5py._debian_h5py_serial._objects.with_phil.wrapper
???
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> ???
E FileNotFoundError: [Errno 2] Unable to synchronously create file (unable to open file: name = '/tmp/tmpnqvfdj7k/tmpnqvfdj7k_multi_cor_results/tomwer_saaxis.h5', errno = 2, error message = 'No such file or directory', flags = 15, o_flags = c2)
h5py/_debian_h5py_serial/h5f.pyx:122: FileNotFoundError
------------------------------ Captured log call -------------------------------
WARNING silx.DEPRECATION:deprecation.py:136 Function from_value is deprecated since silx version 2.1.1. Use 'Enum(value)' instead.
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/reconstruction/scores/params.py", line 173, in load_from_dict
self.score_method = ScoreMethod.from_value(dict_["score_method"])
WARNING silx.DEPRECATION:deprecation.py:136 Function from_value is deprecated since silx version 2.1.1. Use 'Enum(value)' instead.
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/reconstruction/scores/params.py", line 105, in score_method
self._score_method = ScoreMethod.from_value(method)
WARNING silx.DEPRECATION:deprecation.py:136 Function from_value is deprecated since silx version 2.1.1. Use 'Enum(value)' instead.
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/reconstruction/saaxis/params.py", line 94, in load_from_dict
self.mode = ReconstructionMode.from_value(dict_["mode"])
WARNING silx.DEPRECATION:deprecation.py:136 Function from_value is deprecated since silx version 2.1.1. Use 'Enum(value)' instead.
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/reconstruction/saaxis/params.py", line 59, in mode
mode = ReconstructionMode.from_value(mode)
WARNING nxtomo.paths.nxtomo:nxtomo.py:447 version of the NXtomo not found. Will take the latest one (1.4)
WARNING silx.DEPRECATION:deprecation.py:136 Function from_value is deprecated since silx version 2.1.1. Use 'Enum(value)' instead.
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/reconstruction/saaxis/saaxis.py", line 433, in run
mode = ReconstructionMode.from_value(params.mode)
WARNING silx.DEPRECATION:deprecation.py:136 Function from_value is deprecated since silx version 2.1.1. Use 'Enum(value)' instead.
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/reconstruction/nabu/nabucommon.py", line 208, in __init__
self._target = Target.from_value(target)
PROCESS_SUCCEED tomwer.core.process.reconstruction.saaxis.saaxis:processlog.py:60 cor scores of slice {'slice': 4} for scan NXtomo scan(master_file: tmp/tmpnqvfdj7k/tmpnqvfdj7k.h5, entry: entry) computed.
=============================== warnings summary ===============================
../../../../../../usr/lib/python3/dist-packages/tomoscan/framereducer/framereducerbase.py:4
/usr/lib/python3/dist-packages/tomoscan/framereducer/framereducerbase.py:4: DeprecationWarning: numpy.core.numerictypes is deprecated and has been renamed to numpy._core.numerictypes. The numpy._core namespace contains private NumPy internals and its use is discouraged, as NumPy internals can change without warning in any release. In practice, most real-world usage of numpy.core is to access functionality in the public NumPy API. If that is the case, use the public NumPy API. If not, you are using NumPy internals. If you would still like to access an internal attribute, use numpy._core.numerictypes.generic.
from numpy.core.numerictypes import generic as numy_generic
../../../../../../usr/lib/python3/dist-packages/pytools/persistent_dict.py:52
/usr/lib/python3/dist-packages/pytools/persistent_dict.py:52: RecommendedHashNotFoundWarning: Unable to import recommended hash 'siphash24.siphash13', falling back to 'hashlib.sha256'. Run 'python3 -m pip install siphash24' to install the recommended hash.
warn("Unable to import recommended hash 'siphash24.siphash13', "
../../../../../../usr/lib/python3/dist-packages/orangecanvas/utils/localization/__init__.py:5
/usr/lib/python3/dist-packages/orangecanvas/utils/localization/__init__.py:5: DeprecationWarning: import 'orangecanvas.localization', not 'orangecanvas.utils.localization'
warnings.warn(
../../../../../../usr/lib/python3/dist-packages/orangecanvas/utils/localization/si.py:5
/usr/lib/python3/dist-packages/orangecanvas/utils/localization/si.py:5: DeprecationWarning: import 'orangecanvas.localization.si', not 'orangecanvas.utils.localization.si'
warnings.warn(
tomwer/core/tests/test_utils.py::test_flat_field_normalization
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/utils/normalization.py:54: RuntimeWarning: divide by zero encountered in divide
corrrectedImage = (imgData - dark) / (flat - dark)
tomwer/core/process/tests/test_data_watcher.py: 24 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/control/datawatcher/datawatcherobserver.py:533: DeprecationWarning: isSet() is deprecated, use is_set() instead
if self.observations.scanReadyEvent.isSet():
tomwer/core/process/tests/test_data_watcher.py: 20 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/control/datawatcher/datawatcher.py:292: DeprecationWarning: isSet() is deprecated, use is_set() instead
if self.observationThread.scanReadyEvent.isSet():
tomwer/core/scan/tests/test_future_scan.py::test_simple_future_tomo_obj
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/scan/tests/test_future_scan.py:23: DeprecationWarning: There is no current event loop
future = asyncio.Future()
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1
/usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray.
return matrix(data, dtype=dtype, copy=False)
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1
tomwer/core/utils/tests/test_image.py::test_scale_img2_to_img1
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/utils/image.py:125: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
float(vec1[0]) * (img_2 * img_2) + float(vec1[1]) * img_2 + float(vec1[2])
tomwer/core/process/control/tests/test_email.py::test_format_email_info
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/control/emailnotifier.py:119: DeprecationWarning: datetime.datetime.utcnow() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.now(datetime.UTC).
"timestamp": datetime.utcnow().isoformat(timespec="seconds"),
tomwer/core/process/drac/tests/test_icat_processed_dataset.py: 54 warnings
tomwer/core/process/drac/tests/test_icat_raw_dataset.py: 16 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build/tomwer/core/process/drac/dracbase.py:165: DeprecationWarning: 'mode' parameter is deprecated and will be removed in Pillow 13 (2026-10-15)
img = Image.fromarray(image.astype(numpy.uint8), mode="L")
tomwer/core/process/reconstruction/tests/test_saaxis.py: 20 warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=19852) is multi-threaded, use of fork() may lead to deadlocks in the child.
self.pid = os.fork()
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED tomwer/core/process/reconstruction/tests/test_saaxis.py::TestSAAxisProcess::test
=========== 1 failed, 122 passed, 23 skipped, 147 warnings in 12.34s ===========
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_tomwer/build; python3.13 -m pytest -v tomwer/core/*/test_* tomwer/core/*/*/test_* tomwer/core/*/*/*/test_* tomwer/core/*/*/*/*/test_*
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.13 returned exit code 13
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
More information about the Debian-pan-maintainers
mailing list