[Debian-pan-maintainers] Bug#1129889: orange-spectroscopy: FTBFS: 36 failed, 1622 passed, 406 skipped, 192 deselected, 2772 warnings, 2486 subtests passed
Santiago Vila
sanvila at debian.org
Thu Mar 5 23:48:58 GMT 2026
Package: src:orange-spectroscopy
Version: 0.8.1+git20250328-5
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202603/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:orange-spectroscopy, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module
I: pybuild base:384: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_orange-spectroscopy
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
[... snipped ...]
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestReadCoordinates::test_index_nan
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_strange
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py::TestOWHyper::test_unknown_values_axes
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/__init__.py:68: RuntimeWarning: invalid value encountered in cast
return np.round(positions).astype(int), np.isnan(positions)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owhyper.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owhyper.py: 6 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owhyper.py:652: RuntimeWarning: Mean of empty slice
np.nanmean(col_df.iloc[i:i+bin_sz,j:j+bin_sz].to_numpy())
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 14 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 14 warnings
/usr/lib/python3/dist-packages/lmfit/jsonutils.py:30: DeprecationWarning: Please import `gaussian` from the `scipy.signal.windows` namespace; the `scipy.signal.windows.windows` namespace is deprecated and will be removed in SciPy 2.0.0.
t = getattr(module, oname, None)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 32 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 10 warnings
/usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=2530) is multi-threaded, use of fork() may lead to deadlocks in the child.
self.pid = os.fork()
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
/usr/lib/python3/dist-packages/asteval/asteval.py:922: RuntimeWarning: overflow encountered in exp
out = func(*args, **keywords)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py::TestOWPeakFit::test_allint_indv
/usr/lib/python3/dist-packages/asteval/astutils.py:263: RuntimeWarning: invalid value encountered in scalar subtract
ast.Sub: lambda a, b: a - b,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpeakfit.py: 15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpeakfit.py: 15 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/peakfit_compute.py:30: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
output[col] = np.trapz(np.broadcast_to(comps[comp.prefix], x.shape), sorted_x)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py: 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:49: UserWarning: _PLSCommonTransform should define __eq__ and __hash__ to be used for compute_shared
super().__init__(transform)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py: 22 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 22 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/models/pls.py:85: UserWarning: PLSProjector should define __eq__ and __hash__ to be used for compute_value
or set InheritEq = True if inherited methods suffice
return ContinuousVariable(name, compute_value=PLSProjector(transformer, i))
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpls.py: 20 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpls.py: 20 warnings
/usr/lib/python3/dist-packages/orangewidget/gui.py:2070: UserWarning: decorate OWPLS.apply with @gui.deferred and then explicitly call apply.now or apply.deferred.
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpolar.py: 13 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpolar.py: 13 warnings
/usr/lib/python3/dist-packages/orangewidget/utils/listview.py:119: DeprecationWarning: ListViewSearch is deprecated and will be removed in upcoming releases. Use ListViewFilter instead.
warnings.warn(("ListViewSearch is deprecated and will be removed " + "in upcoming releases. Use ListViewFilter instead."),
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _PCAReconstructCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 10 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 10 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _ShiftAndScaleCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _MNFCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py: 18 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 7 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 18 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _XASnormalizationCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py: 4 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py: 11 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _ExtractEXAFSCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestPCADenoising::test_no_samples
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestMNFDenoising::test_no_samples
/usr/lib/python3/dist-packages/Orange/data/table.py:219: UserWarning: <class 'numpy.ndarray'> must return a column, not 2d array
warnings.warn(err)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owpreprocess.py::TestAllPreprocessors::test_allpreproc_indv_empty
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/preprocessors/atm_corr.py:108: RuntimeWarning: All-NaN slice encountered
self.preview_data_max = np.nanmax(spectra_mean(data.X))
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owsnr.py:102: RuntimeWarning: divide by zero encountered in divide
(bottleneck.nanmean(array, axis=0) /
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owsnr.py::TestOWSNR::test_zero_size_data
/usr/lib/python3/dist-packages/Orange/data/table.py:2472: RuntimeWarning: Array contains infinity.
warnings.warn("Array contains infinity.", RuntimeWarning)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_owspectralseries.py: 15 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owspectralseries.py: 15 warnings
/usr/lib/python3/dist-packages/Orange/widgets/gui.py:483: DeprecationWarning: Argument 'valueType' is deprecated and ignored
warnings.warn("Argument 'valueType' is deprecated and ignored",
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _SpSubtractCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97: RuntimeWarning: divide by zero encountered in divide
transd = data.X / ref_X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestTransmittance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestTransmittance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:97: RuntimeWarning: invalid value encountered in divide
transd = data.X / ref_X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:33: RuntimeWarning: divide by zero encountered in log10
np.log10(absd, absd)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:38: RuntimeWarning: divide by zero encountered in log10
absd = np.log10(data.X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 6 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32: RuntimeWarning: divide by zero encountered in divide
absd = ref_X / data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestAbsorbance::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestAbsorbance::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/transform.py:32: RuntimeWarning: invalid value encountered in divide
absd = ref_X / data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 11 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_editor_baseline.py: 1 warning
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 11 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _RubberbandBaselineCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:409: RuntimeWarning: invalid value encountered in divide
data.X /= norm_data.X
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalize::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalize::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:427: RuntimeWarning: invalid value encountered in divide
data.X = data.X / (max - min)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 5 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 5 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:469: RuntimeWarning: divide by zero encountered in divide
return replace_infs(data.X / ref_X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py: 42 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py: 42 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/utils.py:52: UserWarning: _NormalizePhaseReferenceCommon should define __eq__ and __hash__ to be used for compute_shared
super().__init__(commonfn)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_preprocess.py::TestNormalizeReference::test_no_infs
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/preprocess/__init__.py:469: RuntimeWarning: invalid value encountered in divide
return replace_infs(data.X / ref_X)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_readers.py::TestOmnicMapReader::test_read
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_readers.py::TestOmnicMapReader::test_read
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/utils/pymca5/OmnicMap.py:148: RuntimeWarning: invalid value encountered in scalar divide
deltaY = (yPositions[-1] - yPositions[0]) / (self.__nFiles - 1)
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_tile_reader.py: 6 warnings
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_tile_reader.py: 6 warnings
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/widgets/owtilefile.py:121: DeprecationWarning: 'addSpace' has been deprecated. Use gui.separator instead.
vbox = gui.radioButtons(None, self, "source", box=True, addSpace=True,
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestXASnormalization::test_no_infs
/usr/lib/python3/dist-packages/extranormal3/normal_xas.py:83: RuntimeWarning: invalid value encountered in divide
return numpy.array((spectrum[1]-preedge_fitcurve[1]-flattening)/norm_const), norm_const
.pybuild/cpython3_3.13_orange-spectroscopy/build/orangecontrib/spectroscopy/tests/test_xas.py::TestExtractEXAFS::test_file
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_xas.py::TestExtractEXAFS::test_file
/usr/lib/python3/dist-packages/extranormal3/extra_exafs.py:96: RuntimeWarning: divide by zero encountered in divide
sigma=1./k_interp**kweight
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_agilent_fft_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:97: RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py::TestIRFFT::test_multi_ab
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_irfft.py:134: RuntimeWarning: invalid value encountered in log10
ab = np.log10(rsc / ssc)
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image
/usr/lib/python3/dist-packages/_pytest/python.py:170: PytestReturnNotNoneWarning: Test functions should return None, but .pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owalignstack.py::test_image returned <class 'numpy.ndarray'>.
Did you mean to use `assert` instead of `return`?
See https://docs.pytest.org/en/stable/how-to/assert.html#return-not-none for more information.
warnings.warn(
.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py::TestOWFFT::test_calculation
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build/tests/test_owfft.py:111: RuntimeWarning: invalid value encountered in log10
calc_abs = np.log10(rsc.X / ssc.X)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
SUBFAILED[data with just nans] orangecontrib/spectroscopy/tests/test_owalignstack.py::TestOWStackAlign::test_zero_size_data - Exception: All variables in the domain should have unique names.
SUBFAILED[data with just nans] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: Not setting range to [nan, nan]
SUBFAILED[data without rows] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation minimum which has no identity
SUBFAILED[data with just class] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just metas] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just nans] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: Not setting range to [nan, nan]
SUBFAILED[data without rows] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation minimum which has no identity
SUBFAILED[data with just class] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just metas] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas] orangecontrib/spectroscopy/tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data without rows] orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data - IndexError: index 0 is out of bounds for axis 0 with size 0
SUBFAILED[data with just class] orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just continouos outcome] orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just metas] orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[with without attributes, class or metas] orangecontrib/spectroscopy/tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just nans] tests/test_owalignstack.py::TestOWStackAlign::test_zero_size_data - Exception: All variables in the domain should have unique names.
SUBFAILED[data with just nans] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: Not setting range to [nan, nan]
SUBFAILED[data without rows] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation minimum which has no identity
SUBFAILED[data with just class] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just metas] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just nans] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: Not setting range to [nan, nan]
SUBFAILED[data without rows] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation minimum which has no identity
SUBFAILED[data with just class] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just continouos outcome] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data with just metas] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[with without attributes, class or metas] tests/test_owcos.py::TestOWCOS::test_zero_size_data - ValueError: zero-size array to reduction operation fmin which has no identity
SUBFAILED[data without rows] tests/test_owfft.py::TestOWFFT::test_zero_size_data - IndexError: index 0 is out of bounds for axis 0 with size 0
SUBFAILED[data with just class] tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just continouos outcome] tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[data with just metas] tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
SUBFAILED[with without attributes, class or metas] tests/test_owfft.py::TestOWFFT::test_zero_size_data - ValueError: attempt to get argmax of an empty sequence
= 36 failed, 1622 passed, 406 skipped, 192 deselected, 2772 warnings, 2486 subtests passed in 160.29s (0:02:40) =
Widgets left: 0 Max widgets: 9089
E: pybuild pybuild:483: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_orange-spectroscopy/build; python3.13 -m pytest --verbosity=2 -k "not Mixin"
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.14 3.13" returned exit code 13
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
--------------------------------------------------------------------------------
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