[Debian-pan-maintainers] Bug#1022382: pyobjcryst: FTBFS: dh_install: error: missing files, aborting
Lucas Nussbaum
lucas at debian.org
Sun Oct 23 14:19:40 BST 2022
Source: pyobjcryst
Version: 2.2.1-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20221023 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> scons python=/usr/bin/python3 prefix=debian/pyobjcryst install
> scons: Reading SConscript files ...
> <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
> <string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead
> Checking if compiler allows '-fstack-protector-strong'... yes
> Checking if compiler allows '-fwrapv'... yes
> Checking if compiler allows '-ffast-math'... yes
> <string>:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives
> <string>:1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead
> Checking for C++ library ObjCryst... yes
> Checking for C++ library boost_python310... yes
> scons: done reading SConscript files.
> scons: Building targets ...
> g++ -o build/fast-x86_64/asymmetricunit_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/asymmetricunit_ext.cpp
> g++ -o build/fast-x86_64/atom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/atom_ext.cpp
> g++ -o build/fast-x86_64/crystal_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/crystal_ext.cpp
> In file included from build/fast-x86_64/crystal_ext.cpp:46:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/diffractiondatasinglecrystal_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/diffractiondatasinglecrystal_ext.cpp
> In file included from build/fast-x86_64/diffractiondatasinglecrystal_ext.cpp:32:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/general_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/general_ext.cpp
> g++ -o build/fast-x86_64/globaloptim_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/globaloptim_ext.cpp
> g++ -o build/fast-x86_64/globalscatteringpower_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/globalscatteringpower_ext.cpp
> g++ -o build/fast-x86_64/helpers.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/helpers.cpp
> g++ -o build/fast-x86_64/indexing_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/indexing_ext.cpp
> In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/shared_ptr.hpp:17,
> from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
> from /usr/include/boost/python/converter/arg_to_python.hpp:15,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:14,
> from /usr/include/boost/python/object/class.hpp:9,
> from /usr/include/boost/python/class.hpp:13,
> from build/fast-x86_64/indexing_ext.cpp:17:
> /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
> 13 | BOOST_HEADER_DEPRECATED("<iterator>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
> 36 | BOOST_PRAGMA_MESSAGE(
> | ^~~~~~~~~~~~~~~~~~~~
> In file included from build/fast-x86_64/indexing_ext.cpp:35:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/io_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/io_ext.cpp
> In file included from build/fast-x86_64/io_ext.cpp:32:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/lsq_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/lsq_ext.cpp
> g++ -o build/fast-x86_64/molatom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/molatom_ext.cpp
> g++ -o build/fast-x86_64/molbond_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/molbond_ext.cpp
> g++ -o build/fast-x86_64/molbondangle_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/molbondangle_ext.cpp
> In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/shared_ptr.hpp:17,
> from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
> from /usr/include/boost/python/converter/arg_to_python.hpp:15,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:14,
> from /usr/include/boost/python/object/class.hpp:9,
> from /usr/include/boost/python/class.hpp:13,
> from build/fast-x86_64/molbondangle_ext.cpp:29:
> /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
> 13 | BOOST_HEADER_DEPRECATED("<iterator>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
> 36 | BOOST_PRAGMA_MESSAGE(
> | ^~~~~~~~~~~~~~~~~~~~
> g++ -o build/fast-x86_64/moldihedralangle_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/moldihedralangle_ext.cpp
> In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/shared_ptr.hpp:17,
> from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
> from /usr/include/boost/python/converter/arg_to_python.hpp:15,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:14,
> from /usr/include/boost/python/object/class.hpp:9,
> from /usr/include/boost/python/class.hpp:13,
> from build/fast-x86_64/moldihedralangle_ext.cpp:23:
> /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
> 13 | BOOST_HEADER_DEPRECATED("<iterator>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
> 36 | BOOST_PRAGMA_MESSAGE(
> | ^~~~~~~~~~~~~~~~~~~~
> g++ -o build/fast-x86_64/molecule_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/molecule_ext.cpp
> In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/shared_ptr.hpp:17,
> from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
> from /usr/include/boost/python/converter/arg_to_python.hpp:15,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:14,
> from /usr/include/boost/python/object/class.hpp:9,
> from /usr/include/boost/python/class.hpp:13,
> from build/fast-x86_64/molecule_ext.cpp:51:
> /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
> 13 | BOOST_HEADER_DEPRECATED("<iterator>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
> 36 | BOOST_PRAGMA_MESSAGE(
> | ^~~~~~~~~~~~~~~~~~~~
> g++ -o build/fast-x86_64/objregistry_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/objregistry_ext.cpp
> In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/shared_ptr.hpp:17,
> from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
> from /usr/include/boost/python/converter/arg_to_python.hpp:15,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:14,
> from /usr/include/boost/python/object/class.hpp:9,
> from /usr/include/boost/python/class.hpp:13,
> from build/fast-x86_64/objregistry_ext.cpp:24:
> /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
> 13 | BOOST_HEADER_DEPRECATED("<iterator>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
> 36 | BOOST_PRAGMA_MESSAGE(
> | ^~~~~~~~~~~~~~~~~~~~
> g++ -o build/fast-x86_64/polyhedron_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/polyhedron_ext.cpp
> g++ -o build/fast-x86_64/powderpattern_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/powderpattern_ext.cpp
> In file included from build/fast-x86_64/powderpattern_ext.cpp:33:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/powderpatternbackground_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/powderpatternbackground_ext.cpp
> g++ -o build/fast-x86_64/powderpatterncomponent_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/powderpatterncomponent_ext.cpp
> g++ -o build/fast-x86_64/powderpatterndiffraction_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/powderpatterndiffraction_ext.cpp
> g++ -o build/fast-x86_64/pyobjcryst.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/pyobjcryst.cpp
> g++ -o build/fast-x86_64/python_streambuf.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/python_streambuf.cpp
> In file included from build/fast-x86_64/python_streambuf.cpp:50:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> g++ -o build/fast-x86_64/quaternion_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/quaternion_ext.cpp
> g++ -o build/fast-x86_64/radiation_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/radiation_ext.cpp
> g++ -o build/fast-x86_64/refinableobj_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/refinableobj_ext.cpp
> In file included from build/fast-x86_64/refinableobj_ext.cpp:47:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/refinableobjclock_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/refinableobjclock_ext.cpp
> g++ -o build/fast-x86_64/refinablepar_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/refinablepar_ext.cpp
> g++ -o build/fast-x86_64/reflectionprofile_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/reflectionprofile_ext.cpp
> g++ -o build/fast-x86_64/refobjopt_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/refobjopt_ext.cpp
> g++ -o build/fast-x86_64/refpartype_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/refpartype_ext.cpp
> g++ -o build/fast-x86_64/registerconverters.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/registerconverters.cpp
> In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22,
> from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23,
> from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14,
> from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42,
> from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25,
> from /usr/include/boost/smart_ptr/shared_ptr.hpp:29,
> from /usr/include/boost/shared_ptr.hpp:17,
> from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12,
> from /usr/include/boost/python/converter/arg_to_python.hpp:15,
> from /usr/include/boost/python/call.hpp:15,
> from /usr/include/boost/python/object_core.hpp:14,
> from /usr/include/boost/python/object/class.hpp:9,
> from /usr/include/boost/python/class.hpp:13,
> from build/fast-x86_64/registerconverters.cpp:19:
> /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use <iterator> instead.’
> 13 | BOOST_HEADER_DEPRECATED("<iterator>")
> | ^~~~~~~~~~~~~~~~~~~~~~~
> /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’
> 36 | BOOST_PRAGMA_MESSAGE(
> | ^~~~~~~~~~~~~~~~~~~~
> g++ -o build/fast-x86_64/restraint_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/restraint_ext.cpp
> g++ -o build/fast-x86_64/rigidgroup_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/rigidgroup_ext.cpp
> g++ -o build/fast-x86_64/scatterer_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatterer_ext.cpp
> g++ -o build/fast-x86_64/scatteringcomponent_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatteringcomponent_ext.cpp
> g++ -o build/fast-x86_64/scatteringcomponentlist_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatteringcomponentlist_ext.cpp
> g++ -o build/fast-x86_64/scatteringdata_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatteringdata_ext.cpp
> g++ -o build/fast-x86_64/scatteringpower_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatteringpower_ext.cpp
> g++ -o build/fast-x86_64/scatteringpoweratom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatteringpoweratom_ext.cpp
> g++ -o build/fast-x86_64/scatteringpowersphere_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/scatteringpowersphere_ext.cpp
> g++ -o build/fast-x86_64/spacegroup_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/spacegroup_ext.cpp
> g++ -o build/fast-x86_64/stretchmode_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/stretchmode_ext.cpp
> g++ -o build/fast-x86_64/unitcell_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/unitcell_ext.cpp
> g++ -o build/fast-x86_64/zatom_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/zatom_ext.cpp
> g++ -o build/fast-x86_64/zpolyhedron_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/zpolyhedron_ext.cpp
> g++ -o build/fast-x86_64/zscatterer_ext.os -c -DBOOST_ERROR_CODE_HEADER_ONLY -std=c++11 -Wno-unused-result -Wsign-compare -fstack-protector-strong -Wformat -Werror=format-security -fwrapv -Wall -O3 -ffast-math -fPIC -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include build/fast-x86_64/zscatterer_ext.cpp
> In file included from build/fast-x86_64/zscatterer_ext.cpp:32:
> build/fast-x86_64/python_streambuf.hpp: In destructor ‘virtual boost_adaptbx::python::ostream::~ostream()’:
> build/fast-x86_64/python_streambuf.hpp:530:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate]
> 530 | throw std::runtime_error(
> | ^~~~~~~~~~~~~~~~~~~~~~~~~
> 531 | "Problem closing python ostream.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 532 | " Known limitation: the error is unrecoverable. Sorry.\n"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 533 | " Suggestion for programmer: add ostream.flush() before"
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 534 | " returning.");
> | ~~~~~~~~~~~~~~
> build/fast-x86_64/python_streambuf.hpp:530:7: note: in C++11 destructors default to ‘noexcept’
> In member function ‘boost::optional<long int> boost_adaptbx::python::streambuf::seekoff_without_calling_python(off_type, std::ios_base::seekdir, std::ios_base::openmode)’,
> inlined from ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’ at build/fast-x86_64/python_streambuf.hpp:374:72:
> build/fast-x86_64/python_streambuf.hpp:461:16: warning: ‘*(long int*)((char*)&failure + offsetof(const boost::optional<long int>,boost::optional<long int>::<unnamed>.boost::optional_detail::tc_optional_base<long int>::m_storage))’ may be used uninitialized [-Wmaybe-uninitialized]
> 461 | return failure;
> | ^~~~~~~
> build/fast-x86_64/python_streambuf.hpp: In member function ‘virtual boost_adaptbx::python::streambuf::pos_type boost_adaptbx::python::streambuf::seekoff(off_type, std::ios_base::seekdir, std::ios_base::openmode)’:
> build/fast-x86_64/python_streambuf.hpp:428:39: note: ‘failure’ declared here
> 428 | boost::optional<off_type> const failure;
> | ^~~~~~~
> g++ -o build/fast-x86_64/_pyobjcryst.so -s -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/fast-x86_64/asymmetricunit_ext.os build/fast-x86_64/atom_ext.os build/fast-x86_64/crystal_ext.os build/fast-x86_64/diffractiondatasinglecrystal_ext.os build/fast-x86_64/general_ext.os build/fast-x86_64/globaloptim_ext.os build/fast-x86_64/globalscatteringpower_ext.os build/fast-x86_64/helpers.os build/fast-x86_64/indexing_ext.os build/fast-x86_64/io_ext.os build/fast-x86_64/lsq_ext.os build/fast-x86_64/molatom_ext.os build/fast-x86_64/molbond_ext.os build/fast-x86_64/molbondangle_ext.os build/fast-x86_64/moldihedralangle_ext.os build/fast-x86_64/molecule_ext.os build/fast-x86_64/objregistry_ext.os build/fast-x86_64/polyhedron_ext.os build/fast-x86_64/powderpattern_ext.os build/fast-x86_64/powderpatternbackground_ext.os build/fast-x86_64/powderpatterncomponent_ext.os build/fast-x86_64/powderpatterndiffraction_ext.os build/fast-x86_64/pyobjcryst.os build/fast-x86_64/python_streambuf.os build/fast-x86_64/quaternion_ext.os build/fast-x86_64/radiation_ext.os build/fast-x86_64/refinableobj_ext.os build/fast-x86_64/refinableobjclock_ext.os build/fast-x86_64/refinablepar_ext.os build/fast-x86_64/reflectionprofile_ext.os build/fast-x86_64/refobjopt_ext.os build/fast-x86_64/refpartype_ext.os build/fast-x86_64/registerconverters.os build/fast-x86_64/restraint_ext.os build/fast-x86_64/rigidgroup_ext.os build/fast-x86_64/scatterer_ext.os build/fast-x86_64/scatteringcomponent_ext.os build/fast-x86_64/scatteringcomponentlist_ext.os build/fast-x86_64/scatteringdata_ext.os build/fast-x86_64/scatteringpower_ext.os build/fast-x86_64/scatteringpoweratom_ext.os build/fast-x86_64/scatteringpowersphere_ext.os build/fast-x86_64/spacegroup_ext.os build/fast-x86_64/stretchmode_ext.os build/fast-x86_64/unitcell_ext.os build/fast-x86_64/zatom_ext.os build/fast-x86_64/zpolyhedron_ext.os build/fast-x86_64/zscatterer_ext.os -lObjCryst -lboost_python310
> resolve_distutils_target(["install"], ["build/fast-x86_64/_pyobjcryst.so"])
> Mkdir("build/lib.linux-x86_64-cpython-310/pyobjcryst")
> Copy("build/lib.linux-x86_64-cpython-310/pyobjcryst/_pyobjcryst.cpython-310-x86_64-linux-gnu.so", "build/fast-x86_64/_pyobjcryst.so")
> Touch("build/lib.linux-x86_64-cpython-310/pyobjcryst/_pyobjcryst.cpython-310-x86_64-linux-gnu.so")
> /usr/bin/python3 setup.py install --prefix=debian/pyobjcryst
> running install
> /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
> warnings.warn(
> /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools.
> warnings.warn(
> Checking .pth file support in debian/pyobjcryst/local/lib/python3.10/dist-packages/
> /usr/bin/python3 -E -c pass
> TEST FAILED: debian/pyobjcryst/local/lib/python3.10/dist-packages/ does NOT support .pth files
> bad install directory or PYTHONPATH
>
> You are attempting to install a package to a directory that is not
> on PYTHONPATH and which Python does not read ".pth" files from. The
> installation directory you specified (via --install-dir, --prefix, or
> the distutils default setting) was:
>
> debian/pyobjcryst/local/lib/python3.10/dist-packages/
>
> and your PYTHONPATH environment variable currently contains:
>
> ''
>
> Here are some of your options for correcting the problem:
>
> * You can choose a different installation directory, i.e., one that is
> on PYTHONPATH or supports .pth files
>
> * You can add the installation directory to the PYTHONPATH environment
> variable. (It must then also be on PYTHONPATH whenever you run
> Python and want to use the package(s) you are installing.)
>
> * You can set up the installation directory to support ".pth" files by
> using one of the approaches described here:
>
> https://setuptools.pypa.io/en/latest/deprecated/easy_install.html#custom-installation-locations
>
>
> Please make the appropriate changes for your system and try again.
> running bdist_egg
> running egg_info
> writing src/pyobjcryst.egg-info/PKG-INFO
> writing dependency_links to src/pyobjcryst.egg-info/dependency_links.txt
> writing requirements to src/pyobjcryst.egg-info/requires.txt
> writing top-level names to src/pyobjcryst.egg-info/top_level.txt
> reading manifest file 'src/pyobjcryst.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> warning: no previously-included files matching '*.pyc' found under directory 'src'
> warning: no previously-included files matching '.gitattributes' found anywhere in distribution
> warning: no previously-included files matching '.gitignore' found anywhere in distribution
> warning: no previously-included files matching '.gitarchive.cfg' found anywhere in distribution
> warning: no previously-included files matching '.DS_Store' found anywhere in distribution
> warning: no previously-included files found matching 'setup.cfg'
> warning: no previously-included files found matching '.coveragerc'
> warning: no previously-included files found matching '.travis*'
> no previously-included directories found matching 'conda-recipe'
> no previously-included directories found matching 'devutils'
> no previously-included directories found matching 'doc'
> adding license file 'LICENSE.txt'
> adding license file 'LICENSE_DANSE.txt'
> adding license file 'AUTHORS.txt'
> writing manifest file 'src/pyobjcryst.egg-info/SOURCES.txt'
> installing library code to build/bdist.linux-x86_64/egg
> running install_lib
> running build_py
> copying src/pyobjcryst/radiation.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/__init__.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/unitcell.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/crystal.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/scatteringdata.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/zscatterer.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/lsq.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/scatteringpowersphere.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/globaloptim.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/scatteringpower.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/polyhedron.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/reflectionprofile.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/scatterer.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/io.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/molecule.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/diffractiondatasinglecrystal.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/powderpattern.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/indexing.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/refinableobj.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/spacegroup.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/version.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/general.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/atom.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> copying src/pyobjcryst/utils.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> creating build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/__init__.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testmolecule.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testrefinableobj.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testcif.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testlsq.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/debug.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/pyobjcrysttest.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testradiation.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testpowderpattern.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/pyobjcrysttestutils.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/run.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testindexing.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testspacegroup.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testclocks.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testutils.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testconverters.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testcrystal.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> copying src/pyobjcryst/tests/testglobaloptim.py -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests
> /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyobjcryst.tests.testdata' as data is deprecated, please list it in `packages`.
> !!
>
>
> ############################
> # Package would be ignored #
> ############################
> Python recognizes 'pyobjcryst.tests.testdata' as an importable package,
> but it is not listed in the `packages` configuration of setuptools.
>
> 'pyobjcryst.tests.testdata' has been automatically added to the distribution only
> because it may contain data files, but this behavior is likely to change
> in future versions of setuptools (and therefore is considered deprecated).
>
> Please make sure that 'pyobjcryst.tests.testdata' is included as a package by using
> the `packages` configuration field or the proper discovery methods
> (for example by using `find_namespace_packages(...)`/`find_namespace:`
> instead of `find_packages(...)`/`find:`).
>
> You can read more about "package discovery" and "data files" on setuptools
> documentation page.
>
>
> !!
>
> check.warn(importable)
> copying src/pyobjcryst/version.cfg -> build/lib.linux-x86_64-cpython-310/pyobjcryst
> creating build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/Ag_silver.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/BaTiO3.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/C_graphite_hex.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/CaF2_fluorite.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/CaTiO3.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/CdSe_cadmoselite.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/CeO2.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/NaCl.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/Ni.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/PbS_galena.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/PbTe.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/Si.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/Si_setting2.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/SrTiO3_tausonite.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/TiO2_anatase.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/TiO2_rutile.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/ZnS_sphalerite.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/ZnS_wurtzite.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/Zn_zinc.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/caffeine.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/cime.fhz -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/lidocainementhol.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/ni.stru -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/paracetamol.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/paracetamol_monomethanolate.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> copying src/pyobjcryst/tests/testdata/paracetamol_monomethanolate_data_single_crystal.cif -> build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata
> running build_ext
> creating build/bdist.linux-x86_64
> creating build/bdist.linux-x86_64/egg
> creating build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/radiation.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/__init__.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/unitcell.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/crystal.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/scatteringdata.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/zscatterer.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/_pyobjcryst.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/version.cfg -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/lsq.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/scatteringpowersphere.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/globaloptim.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/scatteringpower.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/polyhedron.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/reflectionprofile.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/scatterer.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/io.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/molecule.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/diffractiondatasinglecrystal.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/powderpattern.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/indexing.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/refinableobj.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/spacegroup.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> creating build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/__init__.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testmolecule.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> creating build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/Si_setting2.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/Si.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/Ni.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/BaTiO3.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/lidocainementhol.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/caffeine.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/CdSe_cadmoselite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/PbTe.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/PbS_galena.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/CeO2.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/paracetamol_monomethanolate_data_single_crystal.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/cime.fhz -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/NaCl.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/ZnS_wurtzite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/SrTiO3_tausonite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/TiO2_anatase.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/Ag_silver.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/TiO2_rutile.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/CaTiO3.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/paracetamol.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/Zn_zinc.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/ni.stru -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/CaF2_fluorite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/paracetamol_monomethanolate.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/C_graphite_hex.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testdata/ZnS_sphalerite.cif -> build/bdist.linux-x86_64/egg/pyobjcryst/tests/testdata
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testrefinableobj.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testcif.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testlsq.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/debug.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/pyobjcrysttest.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testradiation.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testpowderpattern.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/pyobjcrysttestutils.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/run.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testindexing.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testspacegroup.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testclocks.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testutils.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testconverters.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testcrystal.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/tests/testglobaloptim.py -> build/bdist.linux-x86_64/egg/pyobjcryst/tests
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/version.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/general.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/atom.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> copying build/lib.linux-x86_64-cpython-310/pyobjcryst/utils.py -> build/bdist.linux-x86_64/egg/pyobjcryst
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/radiation.py to radiation.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/__init__.py to __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/unitcell.py to unitcell.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/crystal.py to crystal.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatteringdata.py to scatteringdata.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/zscatterer.py to zscatterer.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/lsq.py to lsq.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatteringpowersphere.py to scatteringpowersphere.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/globaloptim.py to globaloptim.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatteringpower.py to scatteringpower.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/polyhedron.py to polyhedron.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/reflectionprofile.py to reflectionprofile.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/scatterer.py to scatterer.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/io.py to io.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/molecule.py to molecule.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/diffractiondatasinglecrystal.py to diffractiondatasinglecrystal.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/powderpattern.py to powderpattern.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/indexing.py to indexing.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/refinableobj.py to refinableobj.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/spacegroup.py to spacegroup.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/__init__.py to __init__.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testmolecule.py to testmolecule.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testrefinableobj.py to testrefinableobj.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testcif.py to testcif.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testlsq.py to testlsq.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/debug.py to debug.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/pyobjcrysttest.py to pyobjcrysttest.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testradiation.py to testradiation.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testpowderpattern.py to testpowderpattern.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/pyobjcrysttestutils.py to pyobjcrysttestutils.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/run.py to run.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testindexing.py to testindexing.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testspacegroup.py to testspacegroup.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testclocks.py to testclocks.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testutils.py to testutils.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testconverters.py to testconverters.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testcrystal.py to testcrystal.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/tests/testglobaloptim.py to testglobaloptim.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/version.py to version.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/general.py to general.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/atom.py to atom.cpython-310.pyc
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/utils.py to utils.cpython-310.pyc
> creating stub loader for pyobjcryst/_pyobjcryst.cpython-310-x86_64-linux-gnu.so
> byte-compiling build/bdist.linux-x86_64/egg/pyobjcryst/_pyobjcryst.py to _pyobjcryst.cpython-310.pyc
> creating build/bdist.linux-x86_64/egg/EGG-INFO
> copying src/pyobjcryst.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying src/pyobjcryst.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying src/pyobjcryst.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying src/pyobjcryst.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying src/pyobjcryst.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
> copying src/pyobjcryst.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
> writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
> creating dist
> creating 'dist/pyobjcryst-2.2.1-py3.10-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it
> removing 'build/bdist.linux-x86_64/egg' (and everything under it)
> Processing pyobjcryst-2.2.1-py3.10-linux-x86_64.egg
> creating /<<PKGBUILDDIR>>/debian/pyobjcryst/local/lib/python3.10/dist-packages/pyobjcryst-2.2.1-py3.10-linux-x86_64.egg
> Extracting pyobjcryst-2.2.1-py3.10-linux-x86_64.egg to /<<PKGBUILDDIR>>/debian/pyobjcryst/local/lib/python3.10/dist-packages
>
> Installed /<<PKGBUILDDIR>>/debian/pyobjcryst/local/lib/python3.10/dist-packages/pyobjcryst-2.2.1-py3.10-linux-x86_64.egg
> Processing dependencies for pyobjcryst==2.2.1
> Searching for numpy==1.21.5
> Best match: numpy 1.21.5
> Installing f2py script to debian/pyobjcryst/local/bin
> Installing f2py3 script to debian/pyobjcryst/local/bin
> Installing f2py3.10 script to debian/pyobjcryst/local/bin
>
> Using /usr/lib/python3/dist-packages
> Finished processing dependencies for pyobjcryst==2.2.1
> scons: done building targets.
> dh_numpy3
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_install -O--buildsystem=pybuild
> dh_install: warning: Cannot find (any matches for) "debian/pyobjcryst/lib/python3.*/site-packages/pyobjcryst*/*" (tried in ., debian/tmp)
>
> dh_install: warning: python3-pyobjcryst missing files: debian/pyobjcryst/lib/python3.*/site-packages/pyobjcryst*/*
> dh_install: error: missing files, aborting
> make: *** [debian/rules:9: binary] Error 25
The full build log is available from:
http://qa-logs.debian.net/2022/10/23/pyobjcryst_2.2.1-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221023;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221023&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
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