[Debichem-devel] Bug#570230: avogadro: Segmentation fault upon importing PDB data from a PDB code

[Filippo Rusconi]

Package: avogadro
Version: 1.0.0-2
Severity: important

Greetings,

Avogadro crashes when importing (File->Import->Fetch from PDB) with
PDB code 3B75 (Crystal Structure of Glycated Human Haemoglobin
DOI:10.2210/pdb3b75/pdb).

The console only shows this: 

QStackedLayout::setCurrentWidget: Widget 0x9e23de8 not contained in stack
libpng warning: Ignoring attempt to set cHRM RGB triangle with zero area
Segmentation fault (core dumped)

Thank you,

Filippo

-- System Information:
Debian Release: squeeze/sid
  APT prefers testing
  APT policy: (500, 'testing')
Architecture: i386 (i686)

Kernel: Linux 2.6.32-trunk-686 (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages avogadro depends on:
ii  libavogadro1                  1.0.0-2    Molecular Graphics and Modelling S
ii  libc6                         2.10.2-2   GNU C Library: Shared libraries
ii  libgcc1                       1:4.4.2-9  GCC support library
ii  libgl1-mesa-glx [libgl1]      7.6.1-1    A free implementation of the OpenG
ii  libopenbabel3                 2.2.3-1+b1 Chemical toolbox library
ii  libqt4-opengl                 4:4.5.3-4  Qt 4 OpenGL module
ii  libqtcore4                    4:4.5.3-4  Qt 4 core module
ii  libqtgui4                     4:4.5.3-4  Qt 4 GUI module
ii  libstdc++6                    4.4.2-9    The GNU Standard C++ Library v3
ii  libx11-6                      2:1.3.3-1  X11 client-side library

Versions of packages avogadro recommends:
ii  avogadro-data                 1.0.0-2    Molecular Graphics and Modelling S

avogadro suggests no packages.

-- no debconf information