[Debichem-devel] Bug#703782: Bug#703782: pymol: Unable to launch the Menu
lina
lina.oahz at gmail.com
Mon Mar 25 13:00:33 UTC 2013
>>> What is the output of "ls /usr/local/lib/python2.7/*"?
>>
>> ls /usr/local/lib/python2.7/*
>> /usr/local/lib/python2.7/dist-packages:
>
> [...]
>
>> pymol-1.4.0.egg-info
>
> Well, there is a pymol version there, is that the one you installed from
> subversion? (Why 1.4, if 1.5 is current?)
I have removed and purged it again, here what's the remaining:
:/usr# find . -iname *pymol*
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymolpept.pdb
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymol_like_demo.pyc
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymol_like_demo.py
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymol_demo.py
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymolpept.pqr
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymolpept.pdbqt
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymol_demo.pyc
./lib/python2.7/dist-packages/Pmv/hostappInterface/demo/pymolpept.dx
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymolpept.pdb
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymol_like_demo.pyc
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymol_like_demo.py
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymol_demo.py
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymolpept.pqr
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymolpept.pdbqt
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymol_demo.pyc
./lib/python2.6/dist-packages/Pmv/hostappInterface/demo/pymolpept.dx
./lib/pymodules/python2.7/pmg_tk/startup/dssp_stride_pymol.pyc
./lib/pymodules/python2.7/pmg_tk/startup/dssp_stride_pymol.py
./share/pyshared/Pmv/hostappInterface/demo/pymolpept.pdb
./share/pyshared/Pmv/hostappInterface/demo/pymol_like_demo.py
./share/pyshared/Pmv/hostappInterface/demo/pymol_demo.py
./share/pyshared/Pmv/hostappInterface/demo/pymolpept.pqr
./share/pyshared/Pmv/hostappInterface/demo/pymolpept.pdbqt
./share/pyshared/Pmv/hostappInterface/demo/pymolpept.dx
>
> Maybe you installed it a while ago, and your recent easy-install
> commands activated it again.
Frankly speaking, the easy-install was my first time used days ago.
/usr/local/lib/python2.7# ls -lrt *
site-packages:
total 0
dist-packages:
total 28
drwxr-sr-x 4 root staff 4096 Mar 18 23:07
scikits.statsmodels-0.3.1-py2.7.egg
drwxr-sr-x 4 root staff 4096 Mar 18 23:11
scikit_learn-0.13.1-py2.7-linux-x86_64.egg
drwxr-sr-x 4 root staff 4096 Mar 18 23:39 pytz-2013b-py2.7.egg
drwxr-sr-x 4 root staff 4096 Mar 18 23:41
pandas-0.7.3-py2.7-linux-x86_64.egg
drwxr-sr-x 5 root staff 4096 Mar 19 00:31 QSTK-0.2.5-py2.7.egg
-rw-r--r-- 1 root staff 381 Mar 19 00:31 easy-install.pth
drwxr-sr-x 3 root staff 4096 Mar 25 20:45 web
After re-installation, still the same error.
>
> On the other hand, I had a brief look at the 1.4 codebase, and I don't
> see a difference in PMGApp.py' __init__.
>
>
Thanks again for your time,
Best regards,
> Michael
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