[Debichem-devel] [Outreachy] pymol

[merlettaia]

Hi Andreas,
I've made testsuite for apbs (I took its own tests "(cd tests; python
apbs_tester.py -c test_cases.cfg)", installed them to usr/share/apbs, and
made sure that they work when installed).
Regarding python interface, which is used by pdb2pqr, it is not present in
source archive.
apbs source releases are available on github, but they contain both apbs
and pdb2pqr (probably because they both are developed in the same
repository)
https://github.com/Electrostatics/apbs-pdb2pqr/releases
On SourceForge there are 2 versions of apbs (1.4.1 and 1.4.2), but they
both don't have source archive. Version 1.4.0 is old.
I asked maintainers via gitter channel to add latest apbs source package to
SourceForge, let's see if they'll do it.
But probably changing debian/watch to take releases from github might be
the option.
I also translated debian/copyright to machine-readable format, but I
haven't checked if something is missing. There are also MAPBS (matlab
scripts) inside tools/ directory, they have their own license, but I
haven't installed them and haven't checked if their license present in
debian/copyright yet.

Regarding pymol, I'll fix debian/copyright now.

2016-08-17 10:57 GMT+03:00 Andreas Tille <andreas at an3as.eu>:

> Hi Tanya,
>
> On Tue, Aug 16, 2016 at 08:01:46PM +0300, merlettaia wrote:
> > Could you please take a look at pymol?
>
> I did now.  I fixed some minor lintian issues (DEP3, override for
> spelling).  I also added some Breaks and a versioned dependency which is
> important for upgrades when splitting a package.  Please have a look at
> the commits to debian/control which might be an interesting lesson for
> other packages.
>
> > I made almost everything possible, except solving this warnings (but I
> can
> > fix them too):
> >
> >    I: pymol: desktop-entry-lacks-keywords-entry
> > usr/share/applications/pymol.desktop
>
> Please just let me know if you want to fix this.
>
> >    W: pymol: command-in-menu-file-and-desktop-file pymol
> > usr/share/menu/pymol:7
>
> Fixed by removal of menu file.
>
> Thanks again for your tough work.  I'll upload once I hear from you
> about the desktop file.  I'd also upload if you confirm: "Uhhmmm, no
> idea what keyword would be appropriate."
>
> Kind regards
>
>        Andreas.
>
> --
> http://fam-tille.de
>



-- 
Best wishes,
Tanya.
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