[Debichem-devel] Bug#891750: fixed in comet-ms 2017014-1

[Gianfranco Costamagna]

control: reopen -1
control: notfixed -1 2017014-1

https://launchpad.net/ubuntu/+source/comet-ms/2017014-1/+build/14412235
failing again...

line
g++ -g -O3 -Wall -Wextra -Wno-char-subscripts -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit -lpthread -lmstoolkitlite Comet.o Threading.o CometInterfaces.o CometSearch.o CometPreprocess.o CometPostAnalysis.o CometMassSpecUtils.o CometWriteOut.o CometWriteSqt.o CometWritePepXML.o CometWritePercolator.o CometWriteTxt.o CometSearchManager.o   -o comet-ms


should become 
g++ -g -O3 -Wall -Wextra -Wno-char-subscripts -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__LINUX__ -I/usr/include/libmstoolkit Comet.o Threading.o CometInterfaces.o CometSearch.o CometPreprocess.o CometPostAnalysis.o CometMassSpecUtils.o CometWriteOut.o CometWriteSqt.o CometWritePepXML.o CometWritePercolator.o CometWriteTxt.o CometSearchManager.o -lpthread -lmstoolkitlite  -o comet-ms

probably you should drop debian/Makefile and debian/rules hack?
        cp -vf debian/Makefile debian/build
        cp -vf Comet.cpp debian/build
        cp -vf CometSearch/*.[ch]* debian/build

thanks!

G.

> 
> We believe that the bug you reported is fixed in the latest version of
> comet-ms, which is due to be installed in the Debian FTP archive.
> 
> A summary of the changes between this version and the previous one is
> attached.
> 
> Thank you for reporting the bug, which will now be closed.  If you
> have further comments please address them to 891750 at bugs.debian.org,
> and the maintainer will reopen the bug report if appropriate.
> 
> Debian distribution maintenance software
> pp.
> Filippo Rusconi <lopippo at debian.org> (supplier of updated comet-ms package)
> 
> (This message was generated automatically at their request; if you
> believe that there is a problem with it please contact the archive
> administrators by mailing ftpmaster at ftp-master.debian.org)
> 
> 
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA256
> 
> Format: 1.8
> Date: Thu, 01 Mar 2018 11:37:59 +0100
> Source: comet-ms
> Binary: comet-ms
> Architecture: source amd64
> Version: 2017014-1
> Distribution: unstable
> Urgency: medium
> Maintainer: The Debichem Group <debichem-devel at lists.alioth.debian.org>
> Changed-By: Filippo Rusconi <lopippo at debian.org>
> Description:
>  comet-ms   - Tandem mass spectrometry (MS/MS) search engine
> Closes: 891750
> Changes:
>  comet-ms (2017014-1) unstable; urgency=medium
>  .
>    * New upstream version.
>  .
>    * Updated the patch that modifies the two Makefile_s such that
>      libmstoolkitlite is used from the Debian package. Tested the comet-ms
>      binary ok.
>  .
>    * Fix problem with library linking in the Makefile. Thanks to Gianfranco
>      Costamagna <locutusofborg at debian.org> for reporting that bug
>      (Closes: #891750).
> Checksums-Sha1:
>  927ad9069a6a8ca04f8fd4ad8ebba635e45b6ee0 2053 comet-ms_2017014-1.dsc
>  2d1aceb99b7cf644b583867afeba402beb96a581 1168205 comet-ms_2017014.orig.tar.gz
>  8d8889af74b291821bce8a4b522c8b8d864d3159 5864 comet-ms_2017014-1.debian.tar.xz
>  b3156da28ee1546dbafee5e1c69133f8744bf0a4 1008804 comet-ms-dbgsym_2017014-1_amd64.deb
>  80b29d993525b3a4f49c863bf4c743fc1a1b014e 6200 comet-ms_2017014-1_amd64.buildinfo
>  15cd09e7a6edb17e11cecc18398a0e072b77e6e5 841816 comet-ms_2017014-1_amd64.deb
> Checksums-Sha256:
>  4c40b11f1fd62c91cc84a8f38b10ecc9d2b880b8d58e5aab3e1c3ab2c9070a8a 2053 comet-ms_2017014-1.dsc
>  214a0bc53358ebd07a473ab98e9bcfb47903dc756faa006aaf8c63a29e548428 1168205 comet-ms_2017014.orig.tar.gz

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