[Debichem-devel] Bug#897696: abinit: ftbfs with GCC-8

Fri May 4 13:20:38 BST 2018

Package: src:abinit
Version: 8.0.8-4
Severity: normal
Tags: sid buster
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-8

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.

The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/abinit_8.0.8-4_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.

To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html

[...]
Making all in 65_paw
make[5]: Entering directory '/<<PKGBUILDDIR>>/src/65_paw'
gfortran -DHAVE_CONFIG_H -I. -I../..  -I../../src/61_ionetcdf -I../../src/61_ionetcdf -I../../src/32_util -I../../src/32_util -I../../src/61_occeig -I../../src/61_occeig -I../../src/28_numeric_noabirule -I../../src/28_numeric_noabirule -I../../src/44_abitypes_defs -I../../src/44_abitypes_defs -I../../src/42_libpaw -I../../src/42_libpaw -I../../src/51_manage_mpi -I../../src/51_manage_mpi -I../../src/62_ctqmc -I../../src/62_ctqmc -I../../src/16_hideleave -I../../src/16_hideleave -I../../src/56_io_mpi -I../../src/56_io_mpi -I../../src/43_wvl_wrappers -I../../src/43_wvl_wrappers -I../../src/56_recipspace -I../../src/56_recipspace -I../../src/45_geomoptim -I../../src/45_geomoptim -I../../src/52_fft_mpi_noabirule -I../../src/52_fft_mpi_noabirule -I../../src/56_xc -I../../src/56_xc -I../../src/27_toolbox_oop -I../../src/27_toolbox_oop -I../../src/64_psp -I../../src/64_psp -I../../src/41_geometry -I../../src/41_geometry -I../../src/01_linalg_ext -I../../src/01_linalg_ext -I../../src/53_ffts -I../../src/53_ffts -I../../src/12_hide_mpi -I../../src/12_hide_mpi -I../../src/11_memory_mpi -I../../src/11_memory_mpi -I../../src/10_defs -I../../src/10_defs -I../../src/14_hidewrite -I../../src/14_hidewrite -I../../src/18_timing -I../../src/18_timing -I../../src/57_iovars -I../../src/57_iovars -I../../src/64_atompaw -I../../src/64_atompaw -I../../src/incs -I../../src/incs -I/<<PKGBUILDDIR>>/fallbacks/exports/include   -ffree-form -J/<<PKGBUILDDIR>>/src/mods  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c -o m_paw_pwaves_lmn.o m_paw_pwaves_lmn.F90
gfortran -DHAVE_CONFIG_H -I. -I../..  -I../../src/61_ionetcdf -I../../src/61_ionetcdf -I../../src/32_util -I../../src/32_util -I../../src/61_occeig -I../../src/61_occeig -I../../src/28_numeric_noabirule -I../../src/28_numeric_noabirule -I../../src/44_abitypes_defs -I../../src/44_abitypes_defs -I../../src/42_libpaw -I../../src/42_libpaw -I../../src/51_manage_mpi -I../../src/51_manage_mpi -I../../src/62_ctqmc -I../../src/62_ctqmc -I../../src/16_hideleave -I../../src/16_hideleave -I../../src/56_io_mpi -I../../src/56_io_mpi -I../../src/43_wvl_wrappers -I../../src/43_wvl_wrappers -I../../src/56_recipspace -I../../src/56_recipspace -I../../src/45_geomoptim -I../../src/45_geomoptim -I../../src/52_fft_mpi_noabirule -I../../src/52_fft_mpi_noabirule -I../../src/56_xc -I../../src/56_xc -I../../src/27_toolbox_oop -I../../src/27_toolbox_oop -I../../src/64_psp -I../../src/64_psp -I../../src/41_geometry -I../../src/41_geometry -I../../src/01_linalg_ext -I../../src/01_linalg_ext -I../../src/53_ffts -I../../src/53_ffts -I../../src/12_hide_mpi -I../../src/12_hide_mpi -I../../src/11_memory_mpi -I../../src/11_memory_mpi -I../../src/10_defs -I../../src/10_defs -I../../src/14_hidewrite -I../../src/14_hidewrite -I../../src/18_timing -I../../src/18_timing -I../../src/57_iovars -I../../src/57_iovars -I../../src/64_atompaw -I../../src/64_atompaw -I../../src/incs -I../../src/incs -I/<<PKGBUILDDIR>>/fallbacks/exports/include   -ffree-form -J/<<PKGBUILDDIR>>/src/mods  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c -o m_pawhr.o m_pawhr.F90
gfortran -DHAVE_CONFIG_H -I. -I../..  -I../../src/61_ionetcdf -I../../src/61_ionetcdf -I../../src/32_util -I../../src/32_util -I../../src/61_occeig -I../../src/61_occeig -I../../src/28_numeric_noabirule -I../../src/28_numeric_noabirule -I../../src/44_abitypes_defs -I../../src/44_abitypes_defs -I../../src/42_libpaw -I../../src/42_libpaw -I../../src/51_manage_mpi -I../../src/51_manage_mpi -I../../src/62_ctqmc -I../../src/62_ctqmc -I../../src/16_hideleave -I../../src/16_hideleave -I../../src/56_io_mpi -I../../src/56_io_mpi -I../../src/43_wvl_wrappers -I../../src/43_wvl_wrappers -I../../src/56_recipspace -I../../src/56_recipspace -I../../src/45_geomoptim -I../../src/45_geomoptim -I../../src/52_fft_mpi_noabirule -I../../src/52_fft_mpi_noabirule -I../../src/56_xc -I../../src/56_xc -I../../src/27_toolbox_oop -I../../src/27_toolbox_oop -I../../src/64_psp -I../../src/64_psp -I../../src/41_geometry -I../../src/41_geometry -I../../src/01_linalg_ext -I../../src/01_linalg_ext -I../../src/53_ffts -I../../src/53_ffts -I../../src/12_hide_mpi -I../../src/12_hide_mpi -I../../src/11_memory_mpi -I../../src/11_memory_mpi -I../../src/10_defs -I../../src/10_defs -I../../src/14_hidewrite -I../../src/14_hidewrite -I../../src/18_timing -I../../src/18_timing -I../../src/57_iovars -I../../src/57_iovars -I../../src/64_atompaw -I../../src/64_atompaw -I../../src/incs -I../../src/incs -I/<<PKGBUILDDIR>>/fallbacks/exports/include   -ffree-form -J/<<PKGBUILDDIR>>/src/mods  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c -o m_paw_dmft.o m_paw_dmft.F90
gfortran -DHAVE_CONFIG_H -I. -I../..  -I../../src/61_ionetcdf -I../../src/61_ionetcdf -I../../src/32_util -I../../src/32_util -I../../src/61_occeig -I../../src/61_occeig -I../../src/28_numeric_noabirule -I../../src/28_numeric_noabirule -I../../src/44_abitypes_defs -I../../src/44_abitypes_defs -I../../src/42_libpaw -I../../src/42_libpaw -I../../src/51_manage_mpi -I../../src/51_manage_mpi -I../../src/62_ctqmc -I../../src/62_ctqmc -I../../src/16_hideleave -I../../src/16_hideleave -I../../src/56_io_mpi -I../../src/56_io_mpi -I../../src/43_wvl_wrappers -I../../src/43_wvl_wrappers -I../../src/56_recipspace -I../../src/56_recipspace -I../../src/45_geomoptim -I../../src/45_geomoptim -I../../src/52_fft_mpi_noabirule -I../../src/52_fft_mpi_noabirule -I../../src/56_xc -I../../src/56_xc -I../../src/27_toolbox_oop -I../../src/27_toolbox_oop -I../../src/64_psp -I../../src/64_psp -I../../src/41_geometry -I../../src/41_geometry -I../../src/01_linalg_ext -I../../src/01_linalg_ext -I../../src/53_ffts -I../../src/53_ffts -I../../src/12_hide_mpi -I../../src/12_hide_mpi -I../../src/11_memory_mpi -I../../src/11_memory_mpi -I../../src/10_defs -I../../src/10_defs -I../../src/14_hidewrite -I../../src/14_hidewrite -I../../src/18_timing -I../../src/18_timing -I../../src/57_iovars -I../../src/57_iovars -I../../src/64_atompaw -I../../src/64_atompaw -I../../src/incs -I../../src/incs -I/<<PKGBUILDDIR>>/fallbacks/exports/include   -ffree-form -J/<<PKGBUILDDIR>>/src/mods  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c -o m_pawpwij.o m_pawpwij.F90
gfortran -DHAVE_CONFIG_H -I. -I../..  -I../../src/61_ionetcdf -I../../src/61_ionetcdf -I../../src/32_util -I../../src/32_util -I../../src/61_occeig -I../../src/61_occeig -I../../src/28_numeric_noabirule -I../../src/28_numeric_noabirule -I../../src/44_abitypes_defs -I../../src/44_abitypes_defs -I../../src/42_libpaw -I../../src/42_libpaw -I../../src/51_manage_mpi -I../../src/51_manage_mpi -I../../src/62_ctqmc -I../../src/62_ctqmc -I../../src/16_hideleave -I../../src/16_hideleave -I../../src/56_io_mpi -I../../src/56_io_mpi -I../../src/43_wvl_wrappers -I../../src/43_wvl_wrappers -I../../src/56_recipspace -I../../src/56_recipspace -I../../src/45_geomoptim -I../../src/45_geomoptim -I../../src/52_fft_mpi_noabirule -I../../src/52_fft_mpi_noabirule -I../../src/56_xc -I../../src/56_xc -I../../src/27_toolbox_oop -I../../src/27_toolbox_oop -I../../src/64_psp -I../../src/64_psp -I../../src/41_geometry -I../../src/41_geometry -I../../src/01_linalg_ext -I../../src/01_linalg_ext -I../../src/53_ffts -I../../src/53_ffts -I../../src/12_hide_mpi -I../../src/12_hide_mpi -I../../src/11_memory_mpi -I../../src/11_memory_mpi -I../../src/10_defs -I../../src/10_defs -I../../src/14_hidewrite -I../../src/14_hidewrite -I../../src/18_timing -I../../src/18_timing -I../../src/57_iovars -I../../src/57_iovars -I../../src/64_atompaw -I../../src/64_atompaw -I../../src/incs -I../../src/incs -I/<<PKGBUILDDIR>>/fallbacks/exports/include   -ffree-form -J/<<PKGBUILDDIR>>/src/mods  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c -o m_paw_slater.o m_paw_slater.F90
m_paw_slater.F90:1187:12:

  indlmn  => Pawtab%indlmn(1:6,1:lmn_size)
            1
Error: Assignment to contiguous pointer from non-contiguous target at (1)
m_paw_slater.F90:1188:12:

  indklmn => Pawtab%indklmn(1:8,1:lmn2_size)
            1
Error: Assignment to contiguous pointer from non-contiguous target at (1)
m_paw_slater.F90:804:12:

  indlmn  => Pawtab%indlmn(1:6,1:lmn_size)
            1
Error: Assignment to contiguous pointer from non-contiguous target at (1)
m_paw_slater.F90:805:12:

  indklmn => Pawtab%indklmn(1:8,1:lmn2_size)
            1
Error: Assignment to contiguous pointer from non-contiguous target at (1)
m_paw_slater.F90:625:12:

  indlmn  => Pawtab%indlmn(1:6,1:lmn_size)
            1
Error: Assignment to contiguous pointer from non-contiguous target at (1)
m_paw_slater.F90:626:12:

  indklmn => Pawtab%indklmn(1:8,1:lmn2_size)
            1
Error: Assignment to contiguous pointer from non-contiguous target at (1)
make[5]: *** [Makefile:947: m_paw_slater.o] Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/65_paw'
make[4]: *** [Makefile:835: all-recursive] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: *** [Makefile:2132: all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: *** [Makefile:2058: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: make -j1 returned exit code 2
make[1]: *** [debian/rules:33: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:14: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2