[Debichem-devel] Bug#897727: cp2k: ftbfs with GCC-8

Fri May 4 13:21:11 BST 2018

Package: src:cp2k
Version: 5.1-4
Severity: normal
Tags: sid buster
User: debian-gcc at lists.debian.org
Usertags: ftbfs-gcc-8

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.

The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/cp2k_5.1-4_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.

To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html

[...]
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/base/base_hooks.F base_hooks.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"base/base_hooks.F\"" -I'/<<PKGBUILDDIR>>/src/base/' base_hooks.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/acc/acc_stream.F acc_stream.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"acc/acc_stream.F\"" -I'/<<PKGBUILDDIR>>/src/acc/' acc_stream.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/acc/acc_event.F acc_event.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"acc/acc_event.F\"" -I'/<<PKGBUILDDIR>>/src/acc/' acc_event.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/acc/acc_devmem.F acc_devmem.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"acc/acc_devmem.F\"" -I'/<<PKGBUILDDIR>>/src/acc/' acc_devmem.F90 
/<<PKGBUILDDIR>>/src/acc/acc_devmem.F:353:0:

    SUBROUTINE acc_devmem_info(free, avail)

Warning: 'acc_devmem_info' defined but not used [-Wunused-function]
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/data/dbcsr_data_types.F dbcsr_data_types.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/data/dbcsr_data_types.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/data/' dbcsr_data_types.F90 
/<<PKGBUILDDIR>>/src/dbcsr/data/dbcsr_data_types.F:173:0:

    END FUNCTION dbcsr_datatype_sizeof

Warning: 'size' may be used uninitialized in this function [-Wmaybe-uninitialized]
/<<PKGBUILDDIR>>/src/dbcsr/data/dbcsr_data_types.F:150:0:

    FUNCTION dbcsr_datatype_sizeof(datatype) RESULT(size)

note: 'size' was declared here
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/btree.F btree.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/btree.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' btree.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/dbcsr_types.F dbcsr_types.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/dbcsr_types.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' dbcsr_types.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/dbcsr_array_sort.F dbcsr_array_sort.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/dbcsr_array_sort.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' dbcsr_array_sort.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/dbcsr/base/dbcsr_toollib.F dbcsr_toollib.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"dbcsr/base/dbcsr_toollib.F\"" -I'/<<PKGBUILDDIR>>/src/dbcsr/base/' dbcsr_toollib.F90 
/<<PKGBUILDDIR>>/tools/build_utils/fypp -n /<<PKGBUILDDIR>>/src/mpiwrap/message_passing.F message_passing.F90
mpif90 -c -g -Wall -O2 -ffast-math -funroll-loops -ftree-vectorize -ffree-form -ffree-line-length-none -D__GFORTRAN -D__FFTSG -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6 -D__LIBDERIV_MAX_AM1=5 -D__LIBXC2 -D__parallel -D__BLACS -D__SCALAPACK -D__ELPA3 -I/usr/include/elpa/modules/ -I/usr/include -D__COMPILE_ARCH="\"Linux-x86_64-gfortran\"" -D__COMPILE_DATE="\"Wed May  2 12:06:40 UTC 2018\"" -D__COMPILE_HOST="\"ip-172-31-12-4\"" -D__COMPILE_REVISION="\"svn:18091\"" -D__DATA_DIR="\"/usr/share/cp2k\"" -D__SHORT_FILE__="\"mpiwrap/message_passing.F\"" -I'/<<PKGBUILDDIR>>/src/mpiwrap/' message_passing.F90 
/<<PKGBUILDDIR>>/src/mpiwrap/message_passing.F:36:6:

   USE mpi  ! compiler *errors* mean mpi installation and fortran compiler mismatch: see INSTALL (-D__HAS_NO_MPI_MOD)
      1
Fatal Error: Cannot read module file 'mpi.mod' opened at (1), because it was created by a different version of GNU Fortran
compilation terminated.
make[5]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:428: message_passing.o] Error 1
make[4]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:124: all] Error 2
make[3]: *** [/<<PKGBUILDDIR>>/makefiles/Makefile:113: popt] Error 2
make[2]: *** [Makefile:108: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/makefiles'
make[1]: *** [debian/rules:39: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:25: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2