[Debichem-devel] Bug#924843: msxpertsuite: FTBFS: MassSpectrum.cpp:50:10: fatal error: pwiz/data/msdata/MSDataFile.hpp: No such file or directory

[Lucas Nussbaum]

Source: msxpertsuite
Version: 5.7.3-1
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20190315 qa-ftbfs
Justification: FTBFS in buster on amd64

Hi,

During a rebuild of all packages in buster (in a buster chroot, not a
sid chroot), your package failed to build on amd64.

Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/debian/build/libmass && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_SQL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/<<PKGBUILDDIR>>/debian/build/libmass -I/<<PKGBUILDDIR>>/libmass -I/<<PKGBUILDDIR>>/debian/build/libmass/mass_autogen/include -I/<<PKGBUILDDIR>>/debian/build -I/<<PKGBUILDDIR>> -I/usr/include/pwiz -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSql -isystem /usr/include/x86_64-linux-gnu/qt5/QtScript  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g   -Wno-unknown-pragmas -fPIC -Wall -g -O0 -fopenmp -fPIC -std=c++11 -o CMakeFiles/mass.dir/MassSpectrum.cpp.o -c /<<PKGBUILDDIR>>/libmass/MassSpectrum.cpp
> /<<PKGBUILDDIR>>/libmass/MassSpectrum.cpp:50:10: fatal error: pwiz/data/msdata/MSDataFile.hpp: No such file or directory
>  #include <pwiz/data/msdata/MSDataFile.hpp>
>           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.
> make[4]: *** [libmass/CMakeFiles/mass.dir/build.make:196: libmass/CMakeFiles/mass.dir/MassSpectrum.cpp.o] Error 1

The full build log is available from:
   http://aws-logs.debian.net/2019/03/15/msxpertsuite_5.7.3-1_testing.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.