[Debichem-devel] Bug#924843: msxpertsuite: FTBFS: MassSpectrum.cpp:50:10: fatal error: pwiz/data/msdata/MSDataFile.hpp: No such file or directory

[Filippo Rusconi]

found 924843 5.7.3-1
fixed 924843 5.8.6-2
block 924843 by 923928

thanks

The fix in version 5.8.6-2 (currently in unstable) is needed because libpwiz
changed recently the location of the header files. msxpertsuite was uploaded
after libpwiz exactly as a result of this. However msxpertsuite unfortunately is
blocked in unstable because the documentation building system (daps) cannot yet
enter testing. The un-blocking of daps does not seem be happening anytime soon,
sadly (the un-block bug report was closed last Sun, 17 Mar, see #923928).  

So, if the release managers would reconsider not un-blocking daps, then this bug
would be easily fixable by letting msxpertsuite 5.8.6-2 migrate to testing.

daps is an all-arch project that has no other reverse-dependencies than
msxpertsuite.  The fact that msxpertsuite's documentation (fairly large and
complex) can build using daps is a testimony of the robustness of its debian
packaging.

Thank you for your work on the release of Buster !
Cheers,
Filippo

On Sun, Mar 17, 2019 at 06:58:26PM +0100, Lucas Nussbaum wrote:
>Source: msxpertsuite
>Version: 5.7.3-1
>Severity: serious
>Tags: buster sid
>User: debian-qa at lists.debian.org
>Usertags: qa-ftbfs-20190315 qa-ftbfs
>Justification: FTBFS in buster on amd64
>
>Hi,
>
>During a rebuild of all packages in buster (in a buster chroot, not a
>sid chroot), your package failed to build on amd64.
>
>Relevant part (hopefully):
>> cd /<<PKGBUILDDIR>>/debian/build/libmass && /usr/bin/c++  -DQT_CORE_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_SQL_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -I/<<PKGBUILDDIR>>/debian/build/libmass -I/<<PKGBUILDDIR>>/libmass -I/<<PKGBUILDDIR>>/debian/build/libmass/mass_autogen/include -I/<<PKGBUILDDIR>>/debian/build -I/<<PKGBUILDDIR>> -I/usr/include/pwiz -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSql -isystem /usr/include/x86_64-linux-gnu/qt5/QtScript  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g   -Wno-unknown-pragmas -fPIC -Wall -g -O0 -fopenmp -fPIC -std=c++11 -o CMakeFiles/mass.dir/MassSpectrum.cpp.o -c /<<PKGBUILDDIR>>/libmass/MassSpectrum.cpp
>> /<<PKGBUILDDIR>>/libmass/MassSpectrum.cpp:50:10: fatal error: pwiz/data/msdata/MSDataFile.hpp: No such file or directory
>>  #include <pwiz/data/msdata/MSDataFile.hpp>
>>           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>> compilation terminated.
>> make[4]: *** [libmass/CMakeFiles/mass.dir/build.make:196: libmass/CMakeFiles/mass.dir/MassSpectrum.cpp.o] Error 1
>
>The full build log is available from:
>   http://aws-logs.debian.net/2019/03/15/msxpertsuite_5.7.3-1_testing.log
>
>A list of current common problems and possible solutions is available at
>http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
>
>About the archive rebuild: The rebuild was done on EC2 VM instances from
>Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
>failed build was retried once to eliminate random failures.
>

-- 

⢀⣴⠾⠻⢶⣦⠀  Filippo Rusconi, PhD
⣾⠁⢠⠒⠀⣿⡁   Scientist at CNRS
⢿⡄⠘⠷⠚⠋⠀   Debian Developer
⠈⠳⣄⠀⠀⠀⠀  http://msxpertsuite.org
          http://www.debian.org