[Debichem-devel] Bug#1017717: cp2k: FTBFS: symbol lookup error: /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so: undefined symbol: pmix_value_load

[Andrius Merkys]

Source: cp2k
Version: 9.1-2
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs

Hello,

cp2k fails to build on amd64:

cd tools/manual && \
	/home/merkys/cp2k-9.1/exe/*/cp2k.psmp --xml && \
	saxonb-xslt -o index.html -ext:on cp2k_input.xml cp2k_input.xsl
orted: symbol lookup error:
/usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_ext3x.so:
undefined symbol: pmix_value_load
[barriere:463328] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
daemon on the local node in file
../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 716
[barriere:463328] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
daemon on the local node in file
../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 172
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems.  This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

  orte_ess_init failed
  --> Returned value Unable to start a daemon on the local node (-127)
instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort.  There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems.  This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):

  ompi_mpi_init: ompi_rte_init failed
  --> Returned "Unable to start a daemon on the local node" (-127)
instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init_thread
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
***    and potentially your MPI job)
[barriere:463328] Local abort before MPI_INIT completed completed
successfully, but am not able to aggregate error messages, and not able
to guarantee that all other processes were killed!

Andrius