[Debichem-devel] Bug#1022395: python-gsd: FTBFS: RuntimeError: Non Expected exception in `/<<PKGBUILDDIR>>/doc/fl-examples.rst` line 142

[Lucas Nussbaum]

Source: python-gsd
Version: 2.5.1-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20221023 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_gsd/build sphinx-build -b html doc /<<PKGBUILDDIR>>/.pybuild/html # HTML generator
> Running Sphinx v4.5.0
> making output directory... done
> loading intersphinx inventory from /usr/share/doc/python3/html/objects.inv...
> loading intersphinx inventory from /usr/share/doc/python-numpy-doc/html/objects.inv...
> loading intersphinx inventory from https://hoomd-blue.readthedocs.io/en/latest/objects.inv...
> WARNING: failed to reach any of the inventories with the following issues:
> intersphinx inventory 'https://hoomd-blue.readthedocs.io/en/latest/objects.inv' not fetchable due to <class 'requests.exceptions.ProxyError'>: HTTPSConnectionPool(host='hoomd-blue.readthedocs.io', port=443): Max retries exceeded with url: /en/latest/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f19740a4700>: Failed to establish a new connection: [Errno 111] Connection refused')))
> building [mo]: targets for 0 po files that are out of date
> building [html]: targets for 21 source files that are out of date
> updating environment: [new config] 21 added, 0 changed, 0 removed
> reading sources... [  4%] c-api
> reading sources... [  9%] changes
> reading sources... [ 14%] cli
> reading sources... [ 19%] community
> reading sources... [ 23%] contributing
> reading sources... [ 28%] credits
> reading sources... [ 33%] file-layer
> reading sources... [ 38%] fl-examples
> /usr/lib/python3/dist-packages/IPython/paths.py:70: UserWarning: IPython parent '/sbuild-nonexistent' is not a writable location, using a temp directory.
>   warn("IPython parent '{0}' is not a writable location,"
> WARNING: 
> >>>-------------------------------------------------------------------------
> Exception in /<<PKGBUILDDIR>>/doc/fl-examples.rst at block ending on line 142
> Specify :okexcept: as an option in the ipython:: block to suppress this message
>   Cell In [29], line 2
>     f.write_chunk(name='error', data=numpy.array([1]))
>     ^
> SyntaxError: invalid syntax
> 
> 
> <<<-------------------------------------------------------------------------
> 
> Exception occurred:
>   File "/usr/lib/python3/dist-packages/IPython/sphinxext/ipython_directive.py", line 584, in process_input
>     raise RuntimeError('Non Expected exception in `{}` line {}'.format(filename, lineno))
> RuntimeError: Non Expected exception in `/<<PKGBUILDDIR>>/doc/fl-examples.rst` line 142
> The full traceback has been saved in /tmp/sphinx-err-338kx5bl.log, if you want to report the issue to the developers.
> Please also report this if it was a user error, so that a better error message can be provided next time.
> A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
> make[1]: *** [debian/rules:18: execute_after_dh_auto_build-indep] Error 2


The full build log is available from:
http://qa-logs.debian.net/2022/10/23/python-gsd_2.5.1-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221023;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221023&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.