[Debichem-devel] Bug#1028722: Bug#1028722: prody: FTBFS: AssertionError: 3205 != 3211 : selection 'abs(x) == sqrt(sq(x))' for Selection 'all' failed, expected 3211, selected 3205

[Andrius Merkys]

Control: severity -1 important
Control: tags -1 + moreinfo unreproducible

Hello,

On 2023-01-27 13:40, Adrian Bunk wrote:
> On Sat, Jan 14, 2023 at 01:42:10PM +0100, Lucas Nussbaum wrote:
>> Source: prody
>> Version: 2.3.1+dfsg-3
>> Severity: serious
>> Justification: FTBFS
>> Tags: bookworm sid ftbfs
>> User: lucas at debian.org
>> Usertags: ftbfs-20230113 ftbfs-bookworm
>>
>> Hi,
>>
>> During a rebuild of all packages in sid, your package failed to build
>> on amd64.
>> ...
>>> ======================================================================
>>> FAIL: testFunctionSelection13 (prody.tests.atomic.test_select.TestSelect)
>>> Test function selections 'abs(x) == sqrt(sq(x))' for pdb3mht
>>> ----------------------------------------------------------------------
>>> Traceback (most recent call last):
>>>    File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_prody/build/prody/tests/atomic/test_select.py", line 442, in func
>>>      self.assertEqual(len(sel), natoms,
>>> AssertionError: 3205 != 3211 : selection 'abs(x) == sqrt(sq(x))' for AtomGroup 3mht failed, expected 3211, selected 3205
>>>
>>> ======================================================================
>>> FAIL: testFunctionSelection14 (prody.tests.atomic.test_select.TestSelect)
>>> Test function selections "abs(x) == sqrt(sq(x))"
>>> ----------------------------------------------------------------------
>>> Traceback (most recent call last):
>>>    File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_prody/build/prody/tests/atomic/test_select.py", line 483, in func
>>>      self.assertEqual(len(sel), natoms,
>>> AssertionError: 3205 != 3211 : selection 'abs(x) == sqrt(sq(x))' for Selection 'all' failed, expected 3211, selected 3205
>>>
>>> ----------------------------------------------------------------------
>>> Ran 954 tests in 46.514s
>>>
>>> FAILED (failures=2, skipped=37)
>> ...
> 
> Are you still able to reproduce this?
> 
> It built both on the buildds and in reproducible:
> https://buildd.debian.org/status/package.php?p=prody
> https://tests.reproducible-builds.org/debian/history/prody.html

I cannot reproduce this neither in sid nor bookworm. Maybe this has 
something to do with temporary broken numpy.

Andrius