[Debichem-devel] Bug#1132028: jmol: reading a .cif does not advance beyond the optional preview

Norwid Behrnd nbehrnd at yahoo.com
Fri Mar 27 11:31:14 GMT 2026


Package: jmol
Version: 16.2.33+dfsg-1
Severity: important
X-Debbugs-Cc: nbehrnd at yahoo.com

Dear Maintainer,

In an instance of Debian 13/stable, I installed Jmol 16.2.33 via `sudo apt-get
install jmol`.  While the program starts up as expected, reading the structure
file of interest fails midway: with File -> Open, the widget to access the file
of interest recognizes for instance .cif and .xyz and provides the optional
preview.  However, the subsequent confirmation to use this very file does not
lead to the display of the structure in Jmol's main pane.

The very same files are successfully read and displayed by Avogadro (1.100.0)
equally installed via `apt` from the same releases' repository.


-- System Information:
Debian Release: 13.4
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 6.12.74+deb13+1-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages jmol depends on:
ii  default-jre   2:1.21-76
ii  libjmol-java  16.2.33+dfsg-1

jmol recommends no packages.

jmol suggests no packages.

-- no debconf information
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