[Neurodebian-users] proplem installing FSL on ubuntu 11.10

[Chris Filo Gorgolewski]

It works. Kind of. I can run fslview, but the filesystem it sees is
the chroot one apart from the home directory which is somehow
replaced. I can mount my data partitions, but I am afraid that
mounting them for the second will result in data corruption. Any tips?

Chris

On 4 December 2011 14:59, Yaroslav Halchenko <debian at onerussian.com> wrote:
> uff, since it becomes a FAQ we should blog about it ;)  let me CC an email I
> just have sent out yesterday for a possible cruel (but flexible)
> workaround:
>
> ,---
> | just install debian stable ;-) and I am not kidding, if you like I can
> | give you a list of debootstrap + schroot + tiny wrapper to get it
> | working within your oneiric but from debian chroot
> |
> | actually recipe is pretty much in my talk
> | http://neuro.debian.net/_files/Halchenko_EuroScipy11_3_14s_in_Debian.pdf
> | page 57, just lacks few more tweeks, e.g. add --include=fslview to
> | debootstrap, replace sid with squeeze, and then create a tiny wrapper
> | /usr/bin/fslview
> | such as
> |
> | #!/bin/sh
> | schroot -c squeeze -p fslview
> `---
>
>
>
> On Sun, 04 Dec 2011, Chris Filo Gorgolewski wrote:
>
>> That's a shame - I really miss FSLView. Did you get in touch with FMRIB people?
>
>> Best,
>> Chris
>
>> On 18 October 2011 20:51, Yaroslav Halchenko <debian at onerussian.com> wrote:
>> > quick answer lies in:
>
>> >>          Depends: fslview but it is not going to be installed
>
>> > if you check -- fslview is not available since it depends on
>> > libvtk5.4-qt3 and since qt3 was deprecated and vtk bindings were removed
>> > from the archive -- not installable any more.  Qt4 upstream port
>> > of fslview is "in works" but haven't come to existence yet.
>
>> > you could try doing evil and installing fslview and libvtk5.4-qt3 from
>> > previous release (nutty) but I am not sure if that would actually lead
>> > to something but chaos ;)
>
>> > I guess we would need to relax dependency on fslview and make it
>> > recommended not strictly required... stay tuned to twitter announcements
>
>> > Cheers
>> > --
>> > =------------------------------------------------------------------=
>> > Keep in touch                                     www.onerussian.com
>> > Yaroslav Halchenko                 www.ohloh.net/accounts/yarikoptic
>
>> > _______________________________________________
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>> > Neurodebian-users at lists.alioth.debian.org
>> > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
>
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>
> --
> =------------------------------------------------------------------=
> Keep in touch                                     www.onerussian.com
> Yaroslav Halchenko                 www.ohloh.net/accounts/yarikoptic