[Neurodebian-users] Set up my VM. Problems getting packages

Fri Jan 7 01:58:34 UTC 2011

Hi,

Thanks to all the previous help, I now have my VM set up. In fact, I
am writing to you from it now!

My problem now is getting the packages installed. For example, I click
on applications => neurodebian => openelectrophy. I get a message
saying that I need to install openelectrophy and I agree to that.
Something happens and then I get a box title "installation of
openelectrophy has failed, see /tmp/nd-autoinstall-1V4NDS.log" and
which has all the stuff below in it. The really mysterious bit is that
next time I try to open openelectrophy, there seems to be no problem.
It opens up and seems to start doing whatever it is that
openelectrophy does. I suspect that the source of the error is that
git message at the bottom? What does it mean?

Cheers,

Ariel

sudo: unable to resolve host debian
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  libaudio2 libmysqlclient16 libphonon4 libqt4-assistant libqt4-dbus
  libqt4-designer libqt4-help libqt4-network libqt4-qt3support libqt4-script
  libqt4-scripttools libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test
  libqt4-webkit libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libsvm2
  mysql-common python-libsvm python-mdp python-mysqldb python-pyssdh
  python-qt4 python-sip qt4-qtconfig
Suggested packages:
  nas libqt4-dev python-pp python-egenix-mxdatetime mysql-server-5.1
  mysql-server python-mysqldb-dbg python-qt4-dbg
Recommended packages:
  python-shogun-modular
The following NEW packages will be installed:
  libaudio2 libmysqlclient16 libphonon4 libqt4-assistant libqt4-dbus
  libqt4-designer libqt4-help libqt4-network libqt4-qt3support libqt4-script
  libqt4-scripttools libqt4-sql libqt4-sql-mysql libqt4-svg libqt4-test
  libqt4-webkit libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libsvm2
  mysql-common openelectrophy python-libsvm python-mdp python-mysqldb
  python-pyssdh python-qt4 python-sip qt4-qtconfig
0 upgraded, 30 newly installed, 0 to remove and 84 not upgraded.
1 not fully installed or removed.
Need to get 34.6 MB of archives.
After this operation, 97.7 MB of additional disk space will be used.
Get:1 http://amd64-geomirror.debian.net/debian/ squeeze/main libaudio2
amd64 1.9.2-4 [84.2 kB]
Get:2 http://amd64-geomirror.debian.net/debian/ squeeze/main
mysql-common all 5.1.49-3 [70.9 kB]
Get:3 http://amd64-geomirror.debian.net/debian/ squeeze/main
libmysqlclient16 amd64 5.1.49-3 [1,985 kB]
Get:4 http://neuro.debian.net/debian/ squeeze/main python-pyssdh all
0.0.svn143-1~squeeze.nd1 [120 kB]
Get:5 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqtcore4 amd64 4:4.6.3-4 [2,503 kB]
Get:6 http://neuro.debian.net/debian/ squeeze/main openelectrophy all
0.0.svn143-1~squeeze.nd1 [34.4 kB]
Get:7 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-xml amd64 4:4.6.3-4 [144 kB]
Get:8 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-dbus amd64 4:4.6.3-4 [266 kB]
Get:9 http://amd64-geomirror.debian.net/debian/ squeeze/main libqtgui4
amd64 4:4.6.3-4 [5,113 kB]
Get:10 http://amd64-geomirror.debian.net/debian/ squeeze/main
libphonon4 amd64 4:4.6.0really4.4.2-1 [171 kB]
Get:11 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-network amd64 4:4.6.3-4 [541 kB]
Get:12 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-assistant amd64 4:4.6.3-4 [45.2 kB]
Get:13 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-script amd64 4:4.6.3-4 [871 kB]
Get:14 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-designer amd64 4:4.6.3-4 [5,625 kB]
Get:15 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-sql amd64 4:4.6.3-4 [145 kB]
Get:16 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-help amd64 4:4.6.3-4 [264 kB]
Get:17 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-qt3support amd64 4:4.6.3-4 [1,402 kB]
Get:18 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-scripttools amd64 4:4.6.3-4 [315 kB]
Get:19 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-sql-mysql amd64 4:4.6.3-4 [62.5 kB]
Get:20 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-svg amd64 4:4.6.3-4 [205 kB]
Get:21 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-test amd64 4:4.6.3-4 [94.7 kB]
Get:22 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-xmlpatterns amd64 4:4.6.3-4 [1,559 kB]
Get:23 http://amd64-geomirror.debian.net/debian/ squeeze/main
libqt4-webkit amd64 4:4.6.3-4 [6,397 kB]
Get:24 http://amd64-geomirror.debian.net/debian/ squeeze/main libsvm2
amd64 2.91-1 [42.6 kB]
Get:25 http://amd64-geomirror.debian.net/debian/ squeeze/main
python-libsvm amd64 2.91-1 [13.8 kB]
Get:26 http://amd64-geomirror.debian.net/debian/ squeeze/main
python-mdp all 2.6-1 [294 kB]
Get:27 http://amd64-geomirror.debian.net/debian/ squeeze/main
python-mysqldb amd64 1.2.2-10+b1 [101 kB]
Get:28 http://amd64-geomirror.debian.net/debian/ squeeze/main
python-sip amd64 4.10.2-1 [143 kB]
Get:29 http://amd64-geomirror.debian.net/debian/ squeeze/main
python-qt4 amd64 4.7.3-1+b1 [5,838 kB]
Get:30 http://amd64-geomirror.debian.net/debian/ squeeze/main
python-qt4 amd64 4.7.3-1+b1 [5,838 kB]
Get:31 http://amd64-geomirror.debian.net/debian/ squeeze/main
qt4-qtconfig amd64 4:4.6.3-4 [142 kB]
Fetched 29.8 MB in 11min 59s (41.4 kB/s)
Selecting previously deselected package libaudio2.
(Reading database ... 88936 files and directories currently installed.)
Unpacking libaudio2 (from .../libaudio2_1.9.2-4_amd64.deb) ...
Selecting previously deselected package mysql-common.
Unpacking mysql-common (from .../mysql-common_5.1.49-3_all.deb) ...
Selecting previously deselected package libmysqlclient16.
Unpacking libmysqlclient16 (from .../libmysqlclient16_5.1.49-3_amd64.deb) ...
Selecting previously deselected package libqtcore4.
Unpacking libqtcore4 (from .../libqtcore4_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-xml.
Unpacking libqt4-xml (from .../libqt4-xml_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-dbus.
Unpacking libqt4-dbus (from .../libqt4-dbus_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqtgui4.
Unpacking libqtgui4 (from .../libqtgui4_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libphonon4.
Unpacking libphonon4 (from .../libphonon4_4%3a4.6.0really4.4.2-1_amd64.deb) ...
Selecting previously deselected package libqt4-network.
Unpacking libqt4-network (from .../libqt4-network_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-assistant.
Unpacking libqt4-assistant (from .../libqt4-assistant_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-script.
Unpacking libqt4-script (from .../libqt4-script_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-designer.
Unpacking libqt4-designer (from .../libqt4-designer_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-sql.
Unpacking libqt4-sql (from .../libqt4-sql_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-help.
Unpacking libqt4-help (from .../libqt4-help_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-qt3support.
Unpacking libqt4-qt3support (from
.../libqt4-qt3support_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-scripttools.
Unpacking libqt4-scripttools (from
.../libqt4-scripttools_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-sql-mysql.
Unpacking libqt4-sql-mysql (from .../libqt4-sql-mysql_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-svg.
Unpacking libqt4-svg (from .../libqt4-svg_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-test.
Unpacking libqt4-test (from .../libqt4-test_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-xmlpatterns.
Unpacking libqt4-xmlpatterns (from
.../libqt4-xmlpatterns_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libqt4-webkit.
Unpacking libqt4-webkit (from .../libqt4-webkit_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package libsvm2.
Unpacking libsvm2 (from .../libsvm2_2.91-1_amd64.deb) ...
Selecting previously deselected package python-libsvm.
Unpacking python-libsvm (from .../python-libsvm_2.91-1_amd64.deb) ...
Selecting previously deselected package python-mdp.
Unpacking python-mdp (from .../python-mdp_2.6-1_all.deb) ...
Selecting previously deselected package python-mysqldb.
Unpacking python-mysqldb (from .../python-mysqldb_1.2.2-10+b1_amd64.deb) ...
Selecting previously deselected package python-sip.
Unpacking python-sip (from .../python-sip_4.10.2-1_amd64.deb) ...
Selecting previously deselected package python-qt4.
Unpacking python-qt4 (from .../python-qt4_4.7.3-1+b1_amd64.deb) ...
Selecting previously deselected package qt4-qtconfig.
Unpacking qt4-qtconfig (from .../qt4-qtconfig_4%3a4.6.3-4_amd64.deb) ...
Selecting previously deselected package python-pyssdh.
Unpacking python-pyssdh (from
.../python-pyssdh_0.0.svn143-1~squeeze.nd1_all.deb) ...
Selecting previously deselected package openelectrophy.
Unpacking openelectrophy (from
.../openelectrophy_0.0.svn143-1~squeeze.nd1_all.deb) ...
Processing triggers for man-db ...
Processing triggers for desktop-file-utils ...
Processing triggers for gnome-menus ...
Processing triggers for menu ...
Setting up global (5.7.1-1) ...
hostname: Name or service not known
dpkg: error processing global (--configure):
 subprocess installed post-installation script returned error exit status 1
Setting up libaudio2 (1.9.2-4) ...
configured to not write apport reports
Setting up mysql-common (5.1.49-3) ...
Setting up libmysqlclient16 (5.1.49-3) ...
Setting up libqtcore4 (4:4.6.3-4) ...
Setting up libqt4-xml (4:4.6.3-4) ...
Setting up libqt4-dbus (4:4.6.3-4) ...
Setting up libqtgui4 (4:4.6.3-4) ...
Setting up libphonon4 (4:4.6.0really4.4.2-1) ...
Setting up libqt4-network (4:4.6.3-4) ...
Setting up libqt4-assistant (4:4.6.3-4) ...
Setting up libqt4-script (4:4.6.3-4) ...
Setting up libqt4-designer (4:4.6.3-4) ...
Setting up libqt4-sql (4:4.6.3-4) ...
Setting up libqt4-help (4:4.6.3-4) ...
Setting up libqt4-qt3support (4:4.6.3-4) ...
Setting up libqt4-scripttools (4:4.6.3-4) ...
Setting up libqt4-sql-mysql (4:4.6.3-4) ...
Setting up libqt4-svg (4:4.6.3-4) ...
Setting up libqt4-test (4:4.6.3-4) ...
Setting up libqt4-xmlpatterns (4:4.6.3-4) ...
Setting up libqt4-webkit (4:4.6.3-4) ...
Setting up libsvm2 (2.91-1) ...
Setting up python-libsvm (2.91-1) ...
Setting up python-mdp (2.6-1) ...
Setting up python-mysqldb (1.2.2-10+b1) ...
Setting up python-sip (4.10.2-1) ...
Setting up python-qt4 (4.7.3-1+b1) ...
Setting up qt4-qtconfig (4:4.6.3-4) ...
update-alternatives: using /usr/bin/qtconfig-qt4 to provide
/usr/bin/qtconfig (qtconfig) in auto mode.
Setting up python-pyssdh (0.0.svn143-1~squeeze.nd1) ...
Setting up openelectrophy (0.0.svn143-1~squeeze.nd1) ...
Processing triggers for python-support ...
Processing triggers for menu ...
Errors were encountered while processing:
 global
[master 4a6cadd] committing changes in /etc after apt run
 Author: brain <brain at debian>
 Committer: root <root at debian.(none)>
Your name and email address were configured automatically based
on your username and hostname. Please check that they are accurate.
You can suppress this message by setting them explicitly:

    git config --global user.name "Your Name"
    git config --global user.email you at example.com

If the identity used for this commit is wrong, you can fix it with:

    git commit --amend --author='Your Name <you at example.com>'

 4 files changed, 128 insertions(+), 0 deletions(-)
 create mode 120000 alternatives/qtconfig
 create mode 120000 alternatives/qtconfig.1.gz
 create mode 100644 mysql/my.cnf
E: Sub-process /usr/bin/dpkg returned an error code (1)

-- 
Ariel Rokem
Helen Wills Neuroscience Institute
University of California, Berkeley
http://argentum.ucbso.berkeley.edu/ariel