[Neurodebian-users] tbss_3 cannot open shared object

[Chris Filo Gorgolewski]

What is your $LD_LIBRARY_PATH ?

On 1 June 2011 13:48, Jodene Fine <finej at msu.edu> wrote:
> Dear neurodebian team,
> I have just installed neurdebian with FSL on a VM (v4.0.8), with a
> host directory containing my files on Windows 7.
> When I try to run tbss_3_postreg -S on the data, I receive the following errors:
>
> /usr/share/fsl/4.1/bin/fslhd: error while loading shared libraries:
> libnewimage.so: cannot open shared object file: No such file or
> directory
> [: 175: =: unexpected operator
> affine-registering target to MNI152 space
> /usr/share/fsl/4.1/bin/fslmaths: error while loading shared libraries:
> libnewimage.so: cannot open shared object file: No such file or
> directory
> /usr/share/fsl/4.1/bin/flirt: error while loading shared libraries:
> libnewimage.so: cannot open shared object file: No such file or
> directory
> transforming (and upsampling) all FA images into MNI152 space
> 1_C_DTI_SCK_003_FA_FA
> /usr/share/fsl/4.1/bin/applywarp: error while loading shared
> libraries: libmeshclass.so: cannot open shared object file: No such
> file or directory
>
> I have checked to make sure that the files are actually in the
> /usr/share/fsl/4.1/bin directory and they are.
> echo $PATH results in:
> /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/lib/fsl/4.1
> echo $FSLDIR results in: /usr/share/fsl/4.1
>
> I had already run tbss_1 and 2 on a different machine and had to switch...
>
> Thanks so very much for your help.
>
> Jodene Fine
>
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