[Neurodebian-users] Fwd: melodic crashes under open grid engine (updated neurodebian squeeze)

[Diederick Stoffers]

Hi,

Are you guys aware of this problem? Could it be due to alterations to fsl_sub you have made?

Cheers,

Diederick 

Begin forwarded message:

> From: Diederick Stoffers <d.stoffers at gmail.com>
> Subject: melodic crashes under open grid engine (updated neurodebian squeeze)
> Date: 21 augustus 2012 13:56:51 CEST
> To: FSL - FMRIB's Software Library <FSL at JISCMAIL.AC.UK>
> 
> Hi,
> 
> We are trying to run melodic on a 7T dataset (1.2 mm isotropic, 164x164x58, 280 volumes). It works fine if our grid engine is disabled, but fails midway when it is submitted to the grid (which is actually a 24-core server with 128GB memory). All our resources are set to infinity for SGE and we never even come near swap space. We have never had issues with running things on the grid, FSL or otherwise. Just recently it ran lower-level feat on 3T data from over 100 subjects. 
> 
> QMON shows that feat2_pre, feat4_ica and feat5_stop have finished, but we have no ica results. 
> 
> I have no clue as to what is going wrong. Does anyone have suggestions to track down the problem?
> 
> Cheers,
> 
> Diederick
> 
> 
> 

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