[Neurodebian-users] melodic crashes under open grid engine (updated neurodebian squeeze)

[German Gomez-Herrero]

Hi,

Just to let you know that we just confirmed the reason for the crashes. 
It was due to FSL setting some hard runtime limits on the jobs submitted 
to the queue. I think this may be considered a bug but maybe the FSL 
guys disagree. More info here:

https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;c8356ddc.1208

Best,
Germán

On 12-08-22 1:54 PM, Michael Hanke wrote:
> [resending to the mailing list]
>
> Hi again,
>
> On Wed, Aug 22, 2012 at 10:13:49AM +0200, Michael Hanke wrote:
>> On Wed, Aug 22, 2012 at 10:02:35AM +0200, Diederick Stoffers wrote:
>>> In that case it must be due to problems innate to the FSL suite. We
>>> think we have tracked down the problem, FSL is setting hard limits to
>>> the grid engine queues which are not sufficient for our 7T data. We
>>> are testing and will post if this is indeed the case.
>> Thanks for keeping us posted.
> Actually, if you are tired of SGE -- you could give this recipe a try
>
>    http://neuro.debian.net/blog/2012/2012-03-09_parallelize_fsl_with_condor.html
>
> it shouldn't take longer than a minute to setup, it can be done in
> parallel to SGE, and you can be sure to get support for the FSL+Condor
> tandem from us.
>
> Michael
>
>