[Neurodebian-users] AFNI 3dSkullStrip on Debian

[Chuck Theobald]

Apparently, some AFNI 3dSkullStrip options used by FSL (-use_edge) do 
not work on Debian due to license restrictions, see post by Daniel Glen 
of NIH below. Is there a way to know a priori what other bits don't work 
as well?


Author: Daniel Glen (---.nimh.nih.gov <http://---.nimh.nih.gov>)
Date:   01-07-11 11:19

The error you are running into is caused by using the Debian package 
from Debian's distribution. That version limits certain parts of the 
software because of licensing issues. To get around this issue, it's 
probably easiest to download a binary package from our site instead or 
just the 3dSkullStrip program by itself. You might also try skull 
stripping the anatomical and EPI datasets separately and calling the 
script with "-anat_has_skull no" and "-epi_strip None".

-- 
Chuck Theobald
System Administrator
The Robert and Beverly Lewis Center for Neuroimaging
University of Oregon
P: 541-346-0343
F: 541-346-0345

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