[Neurodebian-users] Segmentation fault with ANTS tools

Yaroslav Halchenko debian at onerussian.com
Thu Mar 8 18:44:48 UTC 2012


we both might have fell into RTFM trap ;)  or may be even more severe
issue (I am not sure even if ANTS is building on wheezy ATM... so situation
might vary).

So:
,----------------------------------------------------------------------------------
| $> /usr/lib/ants/AverageImages
|
| Usage:
|
| /usr/lib/ants/AverageImages ImageDimension Outputfname.nii.gz Normalize <images>
`---

mention that Normalize argument in there... so try

AverageImages 3 out.nii.gz 0 *.nii.gz

and please report back if that works for you :)

> Hello!

> I am trying to make a normalixed template with ANTS tools.When I run
> AverageImages program I am getting segmentation fault. 

> AverageImages 3 out.nii.gz *.nii.gz
>  Averaging 14 images 
>  fn ap_antsT1.nii.gz
>  fn el_antsT1.nii.gz
>  fn hn_antsT1.nii.gz
>  fn hv_antsT1.nii.gz
>  fn jh_antsT1.nii.gz
>  fn jml_antsT1.nii.gz
>  fn jp_antsT1.nii.gz
>  fn jv_antsT1.nii.gz
>  fn mh_antsT1.nii.gz
>  fn mk_antsT1.nii.gz
>  fn pv_antsT1.nii.gz
>  fn rk_antsT1.nii.gz
>  fn sk_antsT1.nii.gz
>  fn sr_antsT1.nii.gz
>  largest image [0, 0, 0]
>  file AverageImages does not exist . 
> Segmentation fault

> Anyone experiencing similar problems? This on Debian Wheezy (AMD64).

> Greetings,

> Antti


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> Neurodebian-users at lists.alioth.debian.org
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Yaroslav Halchenko                 www.ohloh.net/accounts/yarikoptic



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