[Neurodebian-users] Problem with dcm2nii

[Michael Hanke]

Hi Peter,

I am glad you solved this and special thanks for posting the details!

Michael


On Wed, Apr 24, 2013 at 3:28 PM, Kirsch, Peter
<Peter.Kirsch at zi-mannheim.de>wrote:

> Hi again,****
>
> ** **
>
> I now found the reason for my problem.  (it always takes a long time until
> I find time to revisit such problems). I just post my finding for the case
> that anyone else experiences the same problem and searches for a solution.
> The crude behavior (wrong number of dicom files found) is only observable
> when the dicom files are stored on a samba share. When converting locals
> files, everything works on Ubuntu as fine as on other distributions. It’s
> independent of the dcm2nii version (true for NeuroDebian and Centos
> Version) . Seems that it’s neither a direct dcm2nii problem nor a
> NeurDebian version problem but an interaction between dcm2nii and Ubuntu.
> Both, dinifti and mriconvert find the correct number of files (and dinifti
> works with IMA).****
>
> ** **
>
> Best, Peter****
>
> ** **
>
> ** **
>
> *Von:* Michael Hanke [mailto:michael.hanke at gmail.com]
> *Gesendet:* Donnerstag, 28. März 2013 11:56
> *An:* Kirsch, Peter
> *Cc:* neurodebian-users at lists.alioth.debian.org
> *Betreff:* Re: [Neurodebian-users] Problem with dcm2nii****
>
> ** **
>
> Hi,****
>
> ** **
>
> On Thu, Mar 28, 2013 at 11:39 AM, Kirsch, Peter <
> Peter.Kirsch at zi-mannheim.de> wrote:****
>
> Sorry for not answering, I did not receive your replies (Anyway, thanks
> for the fast response). I now subscribed to the list…****
>
> It might indeed be the case that I replaced the May 5 version with the
> December 12 version from my CentOS machine (I thought I did it the other
> way around) but in any case: the behavior did not differ at all.****
>
> ** **
>
> Does that mean you are seeing the problematic behavior with the
> NeuroDebian version from May _and_****
>
> with a Centos version from December on the same Ubuntu machine, but it
> works on Centos?****
>
> ** **
>
> This would be surprising, as dcm2nii is self-contained and doesn't use any
> system libs:****
>
> ** **
>
> % ldd /usr/bin/dcm2nii****
>
>             not a dynamic executable****
>
> ** **
>
> If you can confirm this, we might need to look for reasons beyond the
> scope of dcm2nii.****
>
> ** **
>
> As a sidenote: what happens if you run 'dinifti' from the 'dicomnifiti'
> package on the files?****
>
> Not sure if it handles IMA files, but it should work fine for DICOMs****
>
> ** **
>
> ** **
>
> Michael****
>
> ** **
>
> -- ****
>
> Michael Hanke****
>
> http://mih.voxindeserto.de****
>
> ** **
>



-- 
Michael Hanke
http://mih.voxindeserto.de
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