[Neurodebian-users] BUG: Afni on ubuntu 12.04.

[Williams, Travis]

________________________________________
From: neurodebian-users-bounces+trwilliams=mcw.edu at lists.alioth.debian.org [neurodebian-users-bounces+trwilliams=mcw.edu at lists.alioth.debian.org] on behalf of Yaroslav Halchenko [debian at onerussian.com]
Sent: Monday, January 07, 2013 7:37 PM
To: neurodebian-users at lists.alioth.debian.org
Subject: Re: [Neurodebian-users] BUG: Afni on ubuntu 12.04.

>> Anyone have any ideas?

>sorry about the delay... interestingly, for me it fails,  but
differently (yet to check for details):

>in your case -- what happens if you add LD_PRELOAD like in below:

>LD_PRELOAD=/usr/lib/afni/lib/lib3DEdge.so 3dSkullStrip -input ...

>?

It runs just fine. Very Nice. Thank you. 

>> On Natty there are no problems, with same arch, afni version.

>which are what btw?

Version AFNI_2011_12_21_1014
[[Precompiled binary =Debian-x86_64-1-gnu: Dec 1 2012]]

Natty is 64Bit.

>>On Fri, 04 Jan 2013, Williams, Travis wrote:

>> I've been working on a migration to ubuntu 12.04 in a lab setting and have come across the following problem with the neurodebian afni install:


>> ~> 3dSkullStrip -input anatomyfile.nii.gz

>> 3dSkullStrip: symbol lookup error: /usr/lib/afni/lib/libSUMA.so: undefined symbol: Extract_Gradient_Maxima_3D


--
Yaroslav O. Halchenko
Postdoctoral Fellow,   Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik