[Neurodebian-users] can not install packages in Jessie

David Soto d.soto.b at gmail.com
Fri Apr 11 23:50:19 UTC 2014 

hi again - just thought I should update on this

I've confirmed that the problem with installing stuff form neurodebian
is specific to fsl indeed, am not sure that is due to non-selection of the
non-free option
packages  in neurodebian. My source list looks like

deb http://ftp.uk.debian.org/debian/ jessie main non-free

deb http://security.debian.org/ jessie/updates main

deb http://neurodebian.ovgu.de/debian/ jessie non-free contrib main

SO with this set-up I can successfully run

sudo apt-get install pymvpa2

but not

sudo apt-get install fsl-5.0-core

perhaps with the various attempts there are some traces of fsl???
not sure;
IF I do
apt-cache policy fsl-5.0-core
fsl-5.0-core:
  Installed: (none)
  Candidate: 5.0.6-1~nd80+1
  Version table:
     5.0.6-1~nd80+1 0
        500 http://neurodebian.ovgu.de/debian/ jessie/non-free amd64
Packages



thanks!
ds





On Fri, Apr 11, 2014 at 5:28 PM, David Soto <d.soto.b at gmail.com> wrote:

> *Hi, thanks for the input but not working am afraid :(*
>
> *any advise appreciated I may be missing something trivial!*
>
>
>
> *I noted that when I run *
>
> wget -O- http://neuro.debian.net/lists/jessie.de-md.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
> sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9
>
> *This dont seem to change my /etc/apt/sources.list, should not it?*
>
> *Anyway, I then added myself the following to the source.list  (as per
> your suggestion)*
>
> deb http://neurodebian.ovgu.de/debian data main contrib non-free
> #deb-src http://neurodebian.ovgu.de/debian data main contrib non-free
> deb http://neurodebian.ovgu.de/debian jessie main contrib non-free
> #deb-src http://neurodebian.ovgu.de/debian jessie main contrib non-free
>
>
> *Then I run apt-get update but got this Errors (see bottom)*
>
> Ign http://neurodebian.ovgu.de jessie/main Translation-en
> Ign http://neurodebian.ovgu.de jessie/non-free Translation-en_GB
> Ign http://neurodebian.ovgu.de jessie/non-free Translation-en
> Get:9 http://ftp.uk.debian.org jessie-backports InRelease [101 kB]
> Get:10 http://ftp.uk.debian.org jessie/main Translation-en [4,353 kB]
> Get:11 http://ftp.uk.debian.org jessie-backports/main Sources [14 B]
> Get:12 http://ftp.uk.debian.org jessie-backports/main amd64 Packages [14 B]
> Get:13 http://ftp.uk.debian.org jessie-backports/main Translation-en [14 B]
> Get:14 http://ftp.uk.debian.org jessie/main Sources [6,702 kB]
> Get:15 http://ftp.uk.debian.org jessie/main amd64 Packages [6,364 kB]
> Fetched 17.8 MB in 2min 47s (106 kB/s)
> Reading package lists... Done
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ data/main amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_data_main_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ data/contrib amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_data_contrib_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ data/non-free amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_data_non-free_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ jessie/main amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_jessie_main_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ jessie/contrib amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_jessie_contrib_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ jessie/non-free amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_jessie_non-free_binary-amd64_Packages)
> W: You may want to run apt-get update to correct these problems
> dsoto at dsoto:~$ cat /etc/apt/sources.list
> # deb cdrom:[Debian GNU/Linux jessie-DI-a1 _Jessie_ - Official Snapshot amd64 NETINST Binary-1 20140318-12:38]/ jessie main
> #deb cdrom:[Debian GNU/Linux jessie-DI-a1 _Jessie_ - Official Snapshot amd64 NETINST Binary-1 20140318-12:38]/ jessie main
> deb http://ftp.uk.debian.org/debian/ jessie main
> deb-src http://ftp.uk.debian.org/debian/ jessie main
> deb http://security.debian.org/ jessie/updates main
> deb-src http://security.debian.org/ jessie/updates main
> # jessie-backports, previously on backports.debian.org
>
> deb http://ftp.uk.debian.org/debian/ jessie-backports main
> deb-src http://ftp.uk.debian.org/debian/
>  jessie-backports main
> deb http://neurodebian.ovgu.de/debian data main contrib non-free
> #deb-src http://neurodebian.ovgu.de/debian data main contrib non-free
> deb http://neurodebian.ovgu.de/debian jessie main contrib non-free
> #deb-src http://neurodebian.ovgu.de/debian jessie main contrib non-free
> dsoto at dsoto:~$ ^C
> dsoto at dsoto:~$ ^C
> dsoto at dsoto:~$ sudp apt-get update
> bash: sudp: command not found
> dsoto at dsoto:~$ sudo apt-get update
> Err http://security.debian.org jessie/updates InRelease
>
> Err http://neurodebian.ovgu.de data InRelease
>
> Err http://neurodebian.ovgu.de jessie InRelease
>
> Err http://linux.dropbox.com sid InRelease
>
> Err http://security.debian.org jessie/updates Release.gpg
>   Could not resolve 'security.debian.org'
> Err http://neurodebian.ovgu.de data Release.gpg
>   Could not resolve 'neurodebian.ovgu.de'
> Err http://neurodebian.ovgu.de jessie Release.gpg
>   Could not resolve 'neurodebian.ovgu.de'
> Err http://ftp.uk.debian.org jessie InRelease
>
> Err http://ftp.uk.debian.org jessie-backports InRelease
>
> Err http://linux.dropbox.com sid Release.gpg
>   Could not resolve 'linux.dropbox.com'
> Err http://ftp.uk.debian.org jessie Release.gpg
>   Could not resolve 'ftp.uk.debian.org'
> Err http://ftp.uk.debian.org jessie-backports Release.gpg
>   Could not resolve 'ftp.uk.debian.org'
> Reading package lists... Done
> W: Failed to fetch http://ftp.uk.debian.org/debian/dists/jessie/InRelease
> W: Failed to fetch http://security.debian.org/dists/jessie/updates/InRelease
> W: Failed to fetch http://ftp.uk.debian.org/debian/dists/jessie-backports/InRelease
> W: Failed to fetch http://neurodebian.ovgu.de/debian/dists/data/InRelease
> W: Failed to fetch http://neurodebian.ovgu.de/debian/dists/jessie/InRelease
> W: Failed to fetch http://linux.dropbox.com/debian/dists/sid/InRelease
> W: Failed to fetch http://security.debian.org/dists/jessie/updates/Release.gpg  Could not resolve 'security.debian.org'
> W: Failed to fetch http://neurodebian.ovgu.de/debian/dists/data/Release.gpg  Could not resolve 'neurodebian.ovgu.de'
> W: Failed to fetch http://neurodebian.ovgu.de/debian/dists/jessie/Release.gpg  Could not resolve 'neurodebian.ovgu.de'
> W: Failed to fetch http://linux.dropbox.com/debian/dists/sid/Release.gpg  Could not resolve 'linux.dropbox.com'
> W: Failed to fetch http://ftp.uk.debian.org/debian/dists/jessie/Release.gpg  Could not resolve 'ftp.uk.debian.org'
> W: Failed to fetch http://ftp.uk.debian.org/debian/dists/jessie-backports/Release.gpg  Could not resolve 'ftp.uk.debian.org'
> W: Some index files failed to download. They have been ignored, or old ones used instead.
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ data/main amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_data_main_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ data/contrib amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_data_contrib_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ data/non-free amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_data_non-free_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ jessie/main amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_jessie_main_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ jessie/contrib amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_jessie_contrib_binary-amd64_Packages)
> W: Duplicate sources.list entry http://neurodebian.ovgu.de/debian/ jessie/non-free amd64 Packages (/var/lib/apt/lists/neurodebian.ovgu.de_debian_dists_jessie_non-free_binary-amd64_Packages)
> dsoto at dsoto:~$ sudo apt-get install fsl-5.0-core
> Reading package lists... Done
> Building dependency tree
> Reading state information... Done
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
> The following packages have unmet dependencies:
>  fsl-5.0-core : Depends: tk8.4 (>= 8.4.7) but it is not installable
>                 Depends: tcl8.4 (>= 8.4.7) but it is not installable
>                 Recommends: fsl-5.0-doc (= 5.0.6-1~nd80+1) but it is not going to be installed
>                 Recommends: fsl-5.0-gpu (= 5.0.6-1~nd80+1) but it is not going to be installed
>                 Recommends: fsl-atlases but it is not going to be installed
> E: Unable to correct problems, you have held broken packages.
>
>
>
> On Fri, Apr 11, 2014 at 2:34 PM, David Soto <d.soto.b at gmail.com> wrote:
>
>> hi, I am running Jessie on a thinkpad t440
>> I have installed neurodebian, I've done
>>
>> wget -O- http://neuro.debian.net/lists/jessie.de-md.libre | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
>> sudo apt-key adv --recv-keys --keyserver pgp.mit.edu 2649A5A9
>>
>> sudo apt-get update
>>
>>
>> check the sournces
>> cat /etc/apt/sources.list
>> # deb cdrom:[Debian GNU/Linux jessie-DI-a1 _Jessie_ - Official Snapshot amd64 NETINST Binary-1 20140318-12:38]/ jessie main
>>
>>
>>
>> #deb cdrom:[Debian GNU/Linux jessie-DI-a1 _Jessie_ - Official Snapshot amd64 NETINST Binary-1 20140318-12:38]/ jessie main
>>
>> deb http://ftp.uk.debian.org/debian/ jessie main
>>
>>
>>
>> deb-src http://ftp.uk.debian.org/debian/ jessie main
>>
>> deb http://security.debian.org/ jessie/updates main
>>
>>
>> deb-src http://security.debian.org/ jessie/updates main
>>
>> # jessie-backports, previously on backports.debian.org
>> deb http://ftp.uk.debian.org/debian/ jessie-backports main
>>
>>
>> deb-src http://ftp.uk.debian.org/debian/ jessie-backports main
>>
>>
>> BUT then when I do
>> sudo apt-get install fsl-5.0
>>
>> I get these Es
>>
>> Reading package lists... Done
>> Building dependency tree
>> Reading state information... Done
>> E: Unable to locate package fsl-5.0
>>
>>
>>
>> E: Couldn't find any package by regex 'fsl-5.0'
>>
>> It worked well on my other computer with wheezy!
>>
>> cheers
>> ds
>>
>> --
>> http://www1.imperial.ac.uk/medicine/people/d.soto/
>>
>
>
>
> --
> http://www1.imperial.ac.uk/medicine/people/d.soto/
>



-- 
http://www1.imperial.ac.uk/medicine/people/d.soto/
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