[Neurodebian-users] Seg fault with atlasquery

[Jonathan Brooks]

Based on an earlier discussion on this mailbase I have also checked the installed versions against the installed OS:

$ apt-cache policy fslview
fslview:
  Installed: 4.0.1-2~nd12.04+1
  Candidate: 4.0.1-2~nd12.04+1
  Version table:
 *** 4.0.1-2~nd12.04+1 0
        500 http://neurodebian.g-node.org/ precise/main amd64 Packages
        100 /var/lib/dpkg/status

and

$ apt-cache policy fsl-5.0
fsl-5.0:
  Installed: (none)
  Candidate: 5.0.6-1~nd12.04+1
  Version table:
     5.0.6-1~nd12.04+1 0
        500 http://neurodebian.g-node.org/ precise/non-free amd64 Packages

Still not sure what's wrong here……

I know that on our other cluster (red hat based) we needed to manually install a required qt library, but when I checked on the ubuntu system it looked like everything was in place.

$ ldd /usr/share/fsl/5.0/bin/atlasquery
	linux-vdso.so.1 =>  (0x00007fff5e1ff000)
	libnewmat.so.10 => /usr/lib/libnewmat.so.10 (0x00007fab47974000)
	libniftiio.so.2 => /usr/lib/libniftiio.so.2 (0x00007fab47752000)
	libznz.so.2 => /usr/lib/libznz.so.2 (0x00007fab4754e000)
	libQtGui.so.4 => /usr/lib/x86_64-linux-gnu/libQtGui.so.4 (0x00007fab46880000)
	libQtXml.so.4 => /usr/lib/x86_64-linux-gnu/libQtXml.so.4 (0x00007fab4663b000)
	libQtCore.so.4 => /usr/lib/x86_64-linux-gnu/libQtCore.so.4 (0x00007fab46168000)
	libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fab45e68000)
	libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fab45b6c000)
	libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fab45955000)
	libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fab45595000)
	libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fab45378000)
	libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fab45160000)
	libfontconfig.so.1 => /usr/lib/x86_64-linux-gnu/libfontconfig.so.1 (0x00007fab44f2a000)
	libaudio.so.2 => /usr/lib/x86_64-linux-gnu/libaudio.so.2 (0x00007fab44d12000)
	libglib-2.0.so.0 => /lib/x86_64-linux-gnu/libglib-2.0.so.0 (0x00007fab44a1c000)
	libpng12.so.0 => /lib/x86_64-linux-gnu/libpng12.so.0 (0x00007fab447f4000)
	libfreetype.so.6 => /usr/lib/x86_64-linux-gnu/libfreetype.so.6 (0x00007fab44558000)
	libgobject-2.0.so.0 => /usr/lib/x86_64-linux-gnu/libgobject-2.0.so.0 (0x00007fab44308000)
	libSM.so.6 => /usr/lib/x86_64-linux-gnu/libSM.so.6 (0x00007fab44100000)
	libICE.so.6 => /usr/lib/x86_64-linux-gnu/libICE.so.6 (0x00007fab43ee6000)
	libXi.so.6 => /usr/lib/x86_64-linux-gnu/libXi.so.6 (0x00007fab43cd5000)
	libXrender.so.1 => /usr/lib/x86_64-linux-gnu/libXrender.so.1 (0x00007fab43acb000)
	libXext.so.6 => /usr/lib/x86_64-linux-gnu/libXext.so.6 (0x00007fab438ba000)
	libX11.so.6 => /usr/lib/x86_64-linux-gnu/libX11.so.6 (0x00007fab43584000)
	libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fab43380000)
	librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fab43177000)
	/lib64/ld-linux-x86-64.so.2 (0x00007fab47bf0000)
	libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007fab42f4d000)
	libXt.so.6 => /usr/lib/x86_64-linux-gnu/libXt.so.6 (0x00007fab42ce6000)
	libXau.so.6 => /usr/lib/x86_64-linux-gnu/libXau.so.6 (0x00007fab42ae3000)
	libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007fab428a6000)
	libffi.so.6 => /usr/lib/x86_64-linux-gnu/libffi.so.6 (0x00007fab4269d000)
	libuuid.so.1 => /lib/x86_64-linux-gnu/libuuid.so.1 (0x00007fab42498000)
	libxcb.so.1 => /usr/lib/x86_64-linux-gnu/libxcb.so.1 (0x00007fab4227a000)
	libXdmcp.so.6 => /usr/lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007fab42073000)

Cheers, Jon

--
Jonathan Brooks (PhD) - Senior Research Fellow
CRiCBristol, University of Bristol, St Michael's Hill, Bristol, UK
T: +44(0)117-342-1512 W: http://www.cricbristol.ac.uk