[Neurodebian-users] FSL5.0 Feat problems on Neurodebian

[René Dutschke]

Dear Meng,

I encountered a similar problem under a virtual machine before. I think 
this error occurs due to some problems with access to the shared 
folders. For me it worked after copying the nifti-files to a local 
folder inside the virtual machine.
However, maybe somebody who is more familiar with the VM-environment 
might provide some solution which allows running the analyses with files 
still located in a shared folder.

Best,
René

On 07/15/2014 12:46 AM, Meng Liang wrote:
> Dear experts,
>
> I just installed the latest version of Neurodebian on a Windows7 PC 
> (64bit) (on virtual box) and the FSL5.0-complete on it. The 
> installation process went well without any error message. However, 
> when I try to use Feat, I got two problems:
>
> 1. After FSL5.0 (complete version) installation, it appears under 
> 'Application Menu->Education'. If I launch FSL5.0 from here, I can 
> specify my Feat model without a problem using Feat GUI (I also saved 
> it as 'design.fsf'). But I noticed that the host folder appears as 
> '/media/sf_host/' instead of '/mnt/host'. After clicking Go, a 
> 'S01.feat' folder was created and there is a file called 'feat1' under 
> folder 'S01.feat/logs'. The message in this file is the following:
> ========
> /bin/cp /tmp/feat_AstyoC.fsf design.fsf
>
> /usr/share/fsl/5.0/bin/feat_model design
>
> mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;ln -s 
> /usr/share/fsl/5.0/doc/images .files/images
>
> FATAL ERROR ENCOUNTERED
> ========
>
> 2. If I launch Feat GUI by typing 'Feat' in a terminal after cd to the 
> folder '/mnt/host/S01', I can successfully select the 4D file. 
> However, when I try to specify the output directory after clicking the 
> browse button, I got the following error message:
> =========
> couldn't read directory "/mnt/host/S01/ /": not a directory
> couldn't read directory "/mnt/host/S01/ /": not a directory
>     while executing
> "glob -nocomplain * $dirpatmatch "
>     (procedure "feat_file:LoadDirIntoLists" line 28)
>     invoked from within
> "feat_file:LoadDirIntoLists w0"
>     (procedure "feat_file:setup_dialog" line 106)
>     invoked from within
> "feat_file:setup_dialog $path $output $var_filhis $var_selhis 
> [namespace current] $filetypes $title $command $dirasfile"
>     (procedure "FileEntry::OpenFile" line 18)
>     invoked from within
> "FileEntry::OpenFile .r.nb.fdata.outputdir"
>     ("uplevel" body line 1)
>     invoked from within
> "uplevel \#0 $cmd"
>     (procedure "Button::_release" line 19)
>     invoked from within
> "Button::_release .r.nb.fdata.outputdir.b"
>     (command bound to event)
> ===========
> I got the same error message if I cd to /media/sf_host in a terminal 
> and then launch Feat GUI.
>
> Any help would be very much appreciated.
>
> Best,
> Meng
>
>
> _______________________________________________
> Neurodebian-users mailing list
> Neurodebian-users at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users

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