[Neurodebian-users] Command line issues with FSL

[Kiyotaka Nemoto]

Dear Dillon,

The solution is simple and written in the FSL website.

http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation/Linux

*Quick start for Debian/Ubuntu users*

As of fsl 5.0 all you need do is add ". /etc/fsl/5.0/fsl.sh" to the end of
your .profile file. When you next login you should find the fsl programs
are available.


Hope this helps,

Kiyotaka





2014-03-13 15:03 GMT+09:00 Dillon Niederhut <dillon.niederhut at berkeley.edu>:

> Hello everyone,
>
> I have FSL 5.0.6 installed on Ubuntu 12.0.4LTS through the neurodebian
> repository. The GUI works just fine, but when I try to run commands through
> the terminal, I consistently get errors saying the command cannot be found.
> This is true for starting the FSL GUI through the command line, and every
> command for structural imaging. diffusion imaging, and brain extraction.
> The only exception is FSLView, which seems to work just fine from the
> command line.
>
> I tried uninstalling and reinstalling the FSL core, which hasn't helped.
> I've dug around a bit through the google search results for this issue, but
> trying different command names hasn't helped either. I found a few archived
> email exchanges talking about configuring bash files, but I don't know
> enough about unix to know what this is. Can anyone help?
>
> Thanks,
> Dillon
>
> Dillon Niederhut
> Doctoral Candidate
> University of California, Berkeley
> Department of Anthropology
> 232 Kroeber Hall
> Berkeley, CA 94720
>
>
> _______________________________________________
> Neurodebian-users mailing list
> Neurodebian-users at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users
>



-- 
Kiyotaka Nemoto, M.D., Ph.D.
Assistant Professor
Department of Psychiatry
Division of Clinical Medicine, Faculty of Medicine
University of Tsukuba
1-1-1Tennodai Tsukuba, Ibaraki 305-8575, Japan
E-mail: kiyotaka at nemotos.net
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