[Neurodebian-users] FSL cluster error

[Yaroslav Halchenko]

Thank you Morgan -- you are completely right about this collision with
graphviz

unfortunately it would require a fix up of the fsl.sh we ship, where we
append and not prepend FSL_DIR/bin to the PATH.  As a quick remedy you can do

source /etc/fsl/fsl.sh; export PATH=$FSLDIR/bin:$PATH

P.S. watch out for https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=804881 to
be closed ;)

On Thu, 10 Dec 2015, Morgan Hough wrote:

> Hi Jian Hou,

> It looks like you have cluster from graphviz higher up in your PATH. Check
> "which cluster" to see which binary you are calling and "echo $PATH" to see how
> your path is configured. Hope that helps. 

> Cheers,

> -Morgan

> On Thu, Dec 10, 2015 at 5:08 PM, jian hou <[1]jianhou_nj at 126.com> wrote:

>     Hi all,
>     I performed a nonparametric 1-sample t-test (randomise -i my4Dfile -o
>     OneSampT -1 -T) and then reported cluster results using the following
>     command:
>     cluster -i OneSampT_corrp_tstat1 -t 0.95 -mm
>     However, I got an error which read:
>     ~~~~~~
>     option -i unrecognized - ignored
>     Usage: cluster <options> graphfile
>         -C k - generate no more than k clusters (0)
>            0 : no limit
>         -c k - use clustering method k (0)
>            0 : use modularity
>            1 : use modularity quality
>         -o <outfile> - output file (stdout)
>         -v   - verbose mode
>         -?   - print usage
>     ~~~~~~
>     Could you please guide me how can I fix my problem?
>     Thanks in advance.
>     Cheers,
>     Jian Hou



>      


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> References:

> [1] mailto:jianhou_nj at 126.com
> [2] mailto:Neurodebian-users at lists.alioth.debian.org
> [3] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/neurodebian-users

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-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik