[Neurodebian-users] (no subject)

[Diksha Rathore]

dear neurbo debian users !!


 i have installed FSL 14.1.9 using ubuntu. at the  the running of  feat
registration tool i getting following errors. please help me to  sort out
these errors

/bin/mkdir -p reg

/usr/share/fsl/4.1/bin/fslmaths
/usr/share/fsl/4.1/data/standard/MNI152_T1_2mm_brain standard
** ERROR (nifti_image_read): failed to find header file for
'/usr/share/fsl/4.1/data/standard/MNI152_T1_2mm_brain'
** ERROR: nifti_image_open(/usr/share/fsl/4.1/data/standard/MNI152_T1_2mm_brain):
bad header info
ERROR: failed to open file /usr/share/fsl/4.1/data/standard/MNI152_T1_2mm_brain
Cannot open volume
/usr/share/fsl/4.1/data/standard/MNI152_T1_2mm_brain for reading!

/usr/share/fsl/4.1/bin/flirt -ref standard -in example_func -out
example_func2standard -omat example_func2standard.mat -cost corratio
-dof 12 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp
trilinear
** ERROR (nifti_image_read): failed to find header file for 'standard'
** ERROR: nifti_image_open(standard): bad header info
ERROR: failed to open file standard
ERROR: Could not open image standard
Image Exception : #22 :: Failed to read volume standard
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)

/usr/share/fsl/4.1/bin/convert_xfm -inverse -omat
standard2example_func.mat example_func2standard.mat
Could not open matrix file example_func2standard.mat
Cannot read input-matrix

/usr/share/fsl/4.1/bin/slicer example_func2standard standard -s 2 -x
0.35 sla.png -x 0.45 slb.png -x 0.55 slc.png -x 0.65 sld.png -y 0.35
sle.png -y 0.45 slf.png -y 0.55 slg.png -y 0.65 slh.png -z 0.35
sli.png -z 0.45 slj.png -z 0.55 slk.png -z 0.65 sll.png ;
/usr/share/fsl/4.1/bin/pngappend sla.png + slb.png + slc.png + sld.png
+ sle.png + slf.png + slg.png + slh.png + sli.png + slj.png + slk.png
+ sll.png example_func2standard1.png ; /usr/share/fsl/4.1/bin/slicer
standard example_func2standard -s 2 -x 0.35 sla.png -x 0.45 slb.png -x
0.55 slc.png -x 0.65 sld.png -y 0.35 sle.png -y 0.45 slf.png -y 0.55
slg.png -y 0.65 slh.png -z 0.35 sli.png -z 0.45 slj.png -z 0.55
slk.png -z 0.65 sll.png ; /usr/share/fsl/4.1/bin/pngappend sla.png +
slb.png + slc.png + sld.png + sle.png + slf.png + slg.png + slh.png +
sli.png + slj.png + slk.png + sll.png example_func2standard2.png ;
/usr/share/fsl/4.1/bin/pngappend example_func2standard1.png -
example_func2standard2.png example_func2standard.png; /bin/rm -f
sl?.png
** ERROR (nifti_image_read): failed to find header file for
'example_func2standard'
** ERROR: nifti_image_open(example_func2standard): bad header info
ERROR: failed to open file example_func2standard
ERROR: Could not open image example_func2standard
Image Exception : #22 :: Failed to read volume example_func2standard
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)

 Cannot open sla.png for reading
Segmentation fault (core dumped)
** ERROR (nifti_image_read): failed to find header file for 'standard'
** ERROR: nifti_image_open(standard): bad header info
ERROR: failed to open file standard
ERROR: Could not open image standard
Image Exception : #22 :: Failed to read volume standard
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)

 Cannot open sla.png for reading
Segmentation fault (core dumped)

 Cannot open example_func2standard1.png for reading
Segmentation fault (core dumped)




thank you for your valuable time and consideration

regards

diksha rathore
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