[Neurodebian-users] SienaX doesn't accept options

Yaroslav Halchenko debian at onerussian.com
Wed Mar 4 13:43:03 UTC 2015


On Wed, 04 Mar 2015, Lorenzo Bandieri wrote:

> 2015-02-27 21:19 GMT+01:00 Lorenzo Bandieri <lorenzo.bandieri at gmail.com>:
> > Hi list,

> > I'm using FSL 5.0. I'm trying to pass SienaX (fsl5.0-sienax) an
> > option; according to the documentation[1], it should be possible to
> > pass the optional parameter -B to change the BET defaults, e.g

> > fsl5.0-sienax foo_bar -B "-f 0.3"

> > In my case, every attempt to pass a value with the -B option has been
> > unsuccessful.


> To follow up on this, I asked on the FSL mailing list. Turns out that
> it is likely a bug on the wrapper script, since running plain "sienax"
> works correctly (at least, on some test MRs). If that's ok, I'm going
> to go ahead and open a bug report on fsl-5.0-complete.

no need -- it is indeed a subtle bug in the wrapper... fixing now. fixed
up build should follow shortly

-- 
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist,            Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        



More information about the Neurodebian-users mailing list