[Neurodebian-users] Docker and neurodeb

[Yaroslav Halchenko]

On Wed, 13 Apr 2016, Devin Richard Bayly wrote:

>    Hello there,

>    I wanted to know if anybody has been successful using docker's image of
>    Neurodebian. If so could you please provide me with some clues as to how I
>    might access the afni and fsl capabilities from an initial run? Thank you,
>    I'm sure this is easier than I'm making it.

We build dockers on top of 'standard' debian and ubuntu images which
come without contrib/non-free suites, so you would need to have them
made available:

$> docker run -it --rm=true neurodebian:stretch                 

root at 015141680ff8:/# cat /etc/apt/sources.list.d/neurodebian.sources.list 
deb http://neuro.debian.net/debian stretch main
deb http://neuro.debian.net/debian data main
#deb-src http://neuro.debian.net/debian-devel stretch main

root at 015141680ff8:/# sed -i -e 's,main$,main contrib non-free,g' /etc/apt/sources.list.d/neurodebian.sources.list

root at 015141680ff8:/# cat /etc/apt/sources.list.d/neurodebian.sources.list
deb http://neuro.debian.net/debian stretch main contrib non-free
deb http://neuro.debian.net/debian data main contrib non-free
#deb-src http://neuro.debian.net/debian-devel stretch main contrib non-free

root at 015141680ff8:/# apt-get -qqq update; apt-cache policy fsl-complete
fsl-complete:
  Installed: (none)
  Candidate: 5.0.7-1~nd80+1+nd90+1
  Version table:
     5.0.7-1~nd80+1+nd90+1 0
        500 http://neuro.debian.net/debian/ stretch/contrib amd64 Packages


-- 
Yaroslav O. Halchenko
Center for Open Neuroscience     http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik