[Neurodebian-users] NiBabel 2.2.0 breaks fsleyes 0.10.1-2 on Testing

[Michael Hanke]

Fresh versions for all these packages are uploaded now. FSLeyes is
running again!

Michael


On Sat, Oct 21, 2017 at 2:15 PM, Michael Hanke <mih at debian.org> wrote:
> Hi,
>
> it seems to me that the culprit is the 'fslpy' package that "monkey
> patches" the read_segments() function from NiBabel. The signature of
> this function changed in Nibabel 2.2.0. Hence, all software using this
> bit of fslpy is broken, including the latest fsleyes 0.15.1.
>
> I could not find a fix in the fslpy source repo. I am CC'ing the fslpy
> author.
>
> @Paul: could you please ping me when there is a fix. Thanks!
>
> Once I have this fix, I will roll out updates for packages:
>
> indexed_gzip
> fslpy
> fsleyes-props
> fsleyes-widgets
> fsleyes
>
>
> Michael
>
>
>
> On Fri, Oct 20, 2017 at 03:11:45PM +0200, Michael Hanke wrote:
>> Thanks, we saw that too yesterday. It is on my list of things to fix, by
>> updating fsleyes, presumably.
>>
>> michael
>>
>>
>>
>> On Oct 20, 2017 14:58, "marco tettamanti" <tettamanti.marco at hsr.it> wrote:
>>
>> > Dear Neurodebianers,
>> > a recent upgrade from python-nibabel 2.1.0 to 2.2.0 broke the
>> > functionality of fsleyes 0.10.1-2 installed on my Debian testing distro:
>> >
>> > Linux bll4 4.12.0-2-amd64 #1 SMP Debian 4.12.13-1 (2017-09-19) x86_64
>> > GNU/Linux
>> >
>> > Nifti images were not displayed and loading caused the error message:
>> > "read_arguments takes exactly 3 arguments (4 given)"
>> >
>> > Reverting back to python-nibabel 2.1.0 solved the problem.
>> >
>> > Best wishes,
>> > Marco
>> >
>> > --
>> > Marco Tettamanti, Ph.D.
>> > Nuclear Medicine Department & Division of Neuroscience
>> > IRCCS San Raffaele Scientific Institute
>> > Via Olgettina 58
>> > I-20132 Milano, Italy
>> > Phone ++39-02-26434888 <+39%2002%202643%204888>
>> > Fax ++39-02-26434892 <+39%2002%202643%204892>
>> > Email: tettamanti.marco at hsr.it
>> > Skype: mtettamantihttp://scholar.google.it/citations?user=x4qQl4AAAAAJ
>> >
>> >
>> >
>> >
>> > *Rispetta l’ambiente: non stampare questa mail se non è necessario.
>> > Respect the environment: if it's not necessary, don't print this mail.*
>> >
>> > _______________________________________________
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>> >
>
> --
> Michael Hanke
> GPG: 4096R/C073D2287FFB9E9B
> http://psychoinformatics.de