[pymvpa] detrend, polyord, optarg and the principle of least surprise

Emanuele Olivetti emanuele at relativita.com
Fri Mar 6 14:04:01 UTC 2009


And now pushed a bugfix on my one liner! :-D
See eo/master.

E.

Emanuele Olivetti wrote:
> Pushed. Docstring updated too.
>
> E.
>
> Emanuele Olivetti wrote:
>> Howdy,
>>
>> While playing with polynomial detrend of fMRI data I noticed that
>> I forgot to specify the 'model' parameter and it happened that
>> I was just doing linear detrending.
>> Example:
>>
>> detrend(dataset,polyord=5) # WRONG! This does just LINEAR detrending!!
>>
>> detrend(dataset,model='regress',polyord=5) # CORRECT, poly(5) detrending
>>
>> Would it be OK if we accept the first of the two examples as a valid
>> way to request polynomial detrending? It seems much more natural to
>> me and avoid stupid mistakes like those I did today :)
>>
>> Note that I'd add the same idea for the 'opt_arg' parameter, and not
>> oly for 'polyord'. I.e., 'opt_arg'=!None would mean model='regress' too.
>>
>> If this is OK I can add the trivial patch.
>>
>> Emanuele
>>
>> P.S.: My proposal is warmly supported by other two PyMVPA users here in
>> our Lab ;)
>>
>>
>>
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>>
>>   
>
>




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