[pymvpa] Problem installing on Mac OS X using MacPorts

[Christian Fiebach]

This problem is not existing any more - installation proceeded to the  
point that
manual installation of Shogun is asked for.

I would be interested in knowing why the installation seems to involve  
both python25
and python26 - is this correct?

Does it make sense to install (as did a previous post on this list)  
the whole package
based on python26?

Thanks a lot in advance! Christian

Am 05.12.2009 um 10:17 schrieb Fiebach at uni-heidelberg.de:

> Dear pyMVPA-experts,
>
> I am encountering problems installing pyMVPA using MacPorts on
> a Macbook Pro (15') with Mac OS X snow leopard. The output is
> as follows, the error message is somehow not informative enough
> for me to solve the problem on my own.
> (In the first call of the install command, I pasted it from the
> install site and the last two commands (+matplotlib and +pywavelet)
> were pasted into a separate line. I don't know if the incomplete
> call without matplotlib and pywavelet is the source of the error
> or whether the problem happens somewhere else.)
>
> I am very thankful for your help in advance!!! Christian
>
>
> Christian-Fiebachs-MacBook-Pro-15:~ fiebach$ sudo port install py25- 
> pymvpa +scipy +pynifti +hcluster +libsvm +matplotlib +pywavelet
> --->  Computing dependencies for py25-pymvpa
> --->  Fetching gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://mirrors.kernel.org/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.funet.fi/pub/gnu/prep/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.kddlabs.co.jp/pub/gnu/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.kddlabs.co.jp/pub/gnu/old-gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.dti.ad.jp/pub/GNU/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.informatik.hu-berlin.de/pub/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.lip6.fr/pub/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.chg.ru/pub/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://mirror.internode.on.net/pub/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://mirror.pacific.net.au/pub1/gnu/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://mirror.aarnet.edu.au/pub/GNU/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.unicamp.br/pub/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.gnu.org/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://ftp.gnu.org/gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from ftp://ftp.gnu.org/old-gnu/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://distfiles.macports.org/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://arn.se.distfiles.macports.org/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://aarnet.au.distfiles.macports.org/pub/macports/mpdistfiles/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://svn.macports.org/repository/macports/distfiles/gzip
> --->  Attempting to fetch gzip-1.3.12.tar.gz from http://svn.macports.org/repository/macports/distfiles/general/
> Error: Target org.macports.fetch returned: fetch failed
> Error: The following dependencies failed to build: py25-hcluster  
> py25-numpy atlas gzip fftw-3 py25-nose py25-setuptools python25 db46  
> gdbm readline sqlite3 tk Xft2 fontconfig freetype xrender xorg- 
> libX11 groff xorg-bigreqsproto xorg-inputproto xorg-kbproto xorg- 
> libXau xorg-xproto xorg-libXdmcp xorg-util-macros xorg-xcmiscproto  
> xorg-xextproto xorg-xf86bigfontproto xorg-xtrans xorg-renderproto  
> tcl xorg-libXScrnSaver xorg-libXext xorg-scrnsaverproto py25- 
> matplotlib libpng py25-configobj py25-dateutil py25-tz py25-pyobjc- 
> cocoa py25-pyobjc py25-py2app py25-altgraph py25-bdist_mpkg py25- 
> macholib py25-modulegraph py25-pyobjc2 py25-pyobjc2-cocoa py25- 
> pynifti nifticlib cmake libidn swig-python bison m4 gsed  
> python_select swig py25-pywavelets py25-scipy SuiteSparse metis  
> shogun glpk py26-numpy py26-nose py26-setuptools python26
> Error: Status 1 encountered during processing.
> Christian-Fiebachs-MacBook-Pro-15:~ fiebach$
>
>
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-------------------------------------------------------------
Prof. Dr. Christian Fiebach
Dept. of Psychology, University of Heidelberg
Hauptstr. 47-51; D-69117 Germany
Tel.: ++49-(0)6221-547371
http://fimlab.uni-hd.de
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