[pymvpa] Problem installing on Mac OS X using MacPorts

[Anna Manelis]

Christian,
I am not an expert, but I managed to install PYMVPA on my Snow Leopard by
doing

sudo port install py26-pil py26-numpy py26-scipy py26-ipython
py26-matplotlib +cairo+latex+tkinter  py26-pyobjc2-cocoa python_select
sudo python_select python26

And then

sudo port install py26-pymvpa +scipy +pynifti +hcluster +libsvm
+matplotlib +pywavelet

Although when I tried to install PYMVPA on Leopard, I encountered the same
problem as you (the installation involves py26 even though I explicitly aske
it to involve py25).

Good luck,
Anna.

On Tue, Dec 8, 2009 at 4:36 AM, Christian Fiebach <fiebach at uni-heidelberg.de
> wrote:

> This problem is not existing any more - installation proceeded to the point
> that
> manual installation of Shogun is asked for.
>
> I would be interested in knowing why the installation seems to involve both
> python25
> and python26 - is this correct?
>
> Does it make sense to install (as did a previous post on this list) the
> whole package
> based on python26?
>
> Thanks a lot in advance! Christian
>
> Am 05.12.2009 um 10:17 schrieb Fiebach at uni-heidelberg.de:
>
>  Dear pyMVPA-experts,
>>
>> I am encountering problems installing pyMVPA using MacPorts on
>> a Macbook Pro (15') with Mac OS X snow leopard. The output is
>> as follows, the error message is somehow not informative enough
>> for me to solve the problem on my own.
>> (In the first call of the install command, I pasted it from the
>> install site and the last two commands (+matplotlib and +pywavelet)
>> were pasted into a separate line. I don't know if the incomplete
>> call without matplotlib and pywavelet is the source of the error
>> or whether the problem happens somewhere else.)
>>
>> I am very thankful for your help in advance!!! Christian
>>
>>
>> Christian-Fiebachs-MacBook-Pro-15:~ fiebach$ sudo port install py25-pymvpa
>> +scipy +pynifti +hcluster +libsvm +matplotlib +pywavelet
>> --->  Computing dependencies for py25-pymvpa
>> --->  Fetching gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://mirrors.kernel.org/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.funet.fi/pub/gnu/prep/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.kddlabs.co.jp/pub/gnu/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.kddlabs.co.jp/pub/gnu/old-gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.dti.ad.jp/pub/GNU/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.informatik.hu-berlin.de/pub/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.lip6.fr/pub/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.chg.ru/pub/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://mirror.internode.on.net/pub/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://mirror.pacific.net.au/pub1/gnu/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://mirror.aarnet.edu.au/pub/GNU/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.unicamp.br/pub/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.gnu.org/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://ftp.gnu.org/gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> ftp://ftp.gnu.org/old-gnu/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://distfiles.macports.org/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://arn.se.distfiles.macports.org/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://aarnet.au.distfiles.macports.org/pub/macports/mpdistfiles/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://svn.macports.org/repository/macports/distfiles/gzip
>> --->  Attempting to fetch gzip-1.3.12.tar.gz from
>> http://svn.macports.org/repository/macports/distfiles/general/
>> Error: Target org.macports.fetch returned: fetch failed
>> Error: The following dependencies failed to build: py25-hcluster
>> py25-numpy atlas gzip fftw-3 py25-nose py25-setuptools python25 db46 gdbm
>> readline sqlite3 tk Xft2 fontconfig freetype xrender xorg-libX11 groff
>> xorg-bigreqsproto xorg-inputproto xorg-kbproto xorg-libXau xorg-xproto
>> xorg-libXdmcp xorg-util-macros xorg-xcmiscproto xorg-xextproto
>> xorg-xf86bigfontproto xorg-xtrans xorg-renderproto tcl xorg-libXScrnSaver
>> xorg-libXext xorg-scrnsaverproto py25-matplotlib libpng py25-configobj
>> py25-dateutil py25-tz py25-pyobjc-cocoa py25-pyobjc py25-py2app
>> py25-altgraph py25-bdist_mpkg py25-macholib py25-modulegraph py25-pyobjc2
>> py25-pyobjc2-cocoa py25-pynifti nifticlib cmake libidn swig-python bison m4
>> gsed python_select swig py25-pywavelets py25-scipy SuiteSparse metis shogun
>> glpk py26-numpy py26-nose py26-setuptools python26
>> Error: Status 1 encountered during processing.
>> Christian-Fiebachs-MacBook-Pro-15:~ fiebach$
>>
>>
>> _______________________________________________
>> Pkg-ExpPsy-PyMVPA mailing list
>> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
>> http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
>>
>>
>
>
>
> -------------------------------------------------------------
> Prof. Dr. Christian Fiebach
> Dept. of Psychology, University of Heidelberg
> Hauptstr. 47-51; D-69117 Germany
> Tel.: ++49-(0)6221-547371
> http://fimlab.uni-hd.de
> -------------------------------------------------------------
>
>
>
>
>
> _______________________________________________
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