[pymvpa] Can't access an enabled classifier attribute.
Yaroslav Halchenko
debian at onerussian.com
Tue Nov 27 14:49:34 UTC 2012
On Tue, 27 Nov 2012, Roberto Guidotti wrote:
> Dear all,
> I've a problem with classifier's conditional attributes (it is possibly
> due to a bad command understanding, by myself, I admit!):
> clf = LinearCSVMC(C=1, probability=1, enable_ca=['probabilities'])
> cvte = CrossValidation(clf, NFoldPartitioner(cvtype = 1),
> enable_ca=['stats', 'repetition_results'])
> train_err = cvte(evds)
> When I try to see inside the conditional attributes of my trained
> classifier clf with the command below
> probabilities = clf.ca.probabilities
odd enough above snippet (with probabilities = clf.ca.probabilities)
works for me just fine. but -- this way you are obtaining
probabilities only for the last cross-validation fold. what is the goal
-- to get them for every CV fold? (then CrossValidation should get a
callback to harvest them) or on all the data (then you would need to
"clf.train(evds); clf.predict(evds);" and then gather
clf.ca.probabilities
> I have this exception
> UnknownStateError: Unknown yet value of probabilities
> Instead using a classifier defined as:
> clf = LinearCSVMC(C=1, probability=1, enable_ca=['probabilities',
> 'training_stats'])
> I could store my probabilities.
> Am I doing all the things well?
> Thank you
> Roberto
--
Yaroslav O. Halchenko
Postdoctoral Fellow, Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
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