[pymvpa] Multiple datasets in one hdf5 file

Yaroslav Halchenko debian at onerussian.com
Thu Jul 9 02:21:50 UTC 2015


On Thu, 09 Jul 2015, 孔令军 wrote:

>  Hi,

>    Thank you so much for the replies!! I now have 15 subject's datasets in
>    one file, but seem to still be missing something.

>    (I had used the h5save('/tmp/out.h5', [ds1, ds2]) to make the one file
>    consist of the 15 subjects.) 

this seems to save only 2 datasets, not 15 datasets (1 per each subject).

>    Working through the hyperalignment tutorial, after loading using h5load,
>    zscoring the individual datasets or inserting subject IDs to the
>    individual datasets doesn't work with my combined dataset file (missing
>    some attributes). 

we can't help unless we know details... so whenever something doesn't
work give as much detail as possible (without overflooding the email
though! ;) ):  what "some attributes?"

> It definitely works when using the example
>    hyperalignment dataset file though.
>    Pardon me for the repeated questions on this. Would anyone please let me 
>    know if there is something I am neglecting to do before saving all
>    the datasets into the one file? 

once again -- "evil is in detail" -- what are the errors you are
getting? ;)


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-- 
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Research Scientist,            Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834                       Fax: +1 (603) 646-1419
WWW:   http://www.linkedin.com/in/yarik        



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