[pymvpa] LinearCSVMC not found in PyMVPA-upstream-2.4.0 release
Melanie Boly
boly.melanie at gmail.com
Thu Jul 30 15:33:27 UTC 2015
sok found it and with Swig3.0.4 now it works! thanks so much to everybody, Melanie
> On Jul 30, 2015, at 10:15 AM, Melanie Boly <boly.melanie at gmail.com> wrote:
>
> Dear Nick,
> Thank you so much for your comments; trying to apply your
> recommendation, but missing one simple step: what is the 'PyMVPA root
> directory'?
> Thanks so much,
> Melanie
>
> On Sun, Jul 19, 2015 at 8:44 AM, Nick Oosterhof
> <n.n.oosterhof at googlemail.com> wrote:
>>
>>> On 15 Jul 2015, at 18:46, Feilong Ma <mafeilong at gmail.com> wrote:
>>>
>>> I had a similar problem while installing PyMVPA on Mac OS (10.10.4). I think the problem is related to this line:
>>> https://github.com/PyMVPA/PyMVPA/blob/master/mvpa2/clfs/libsvmc/_svm.py#L22
>>>
>>> When I tried to run this line in ipython
>>> from mvpa2.clfs.libsvmc._svmc import C_SVC, NU_SVC, ONE_CLASS, EPSILON_SVR
>>> What I got is:
>>> ImportError: cannot import name C_SVC
>>
>> I get the same error. Briefly (see below for details), it seems due to a change in SWIG, with later versions giving issues.
>>
>> When running "python setup.py build_ext” and copying over the .o and .so files from the build directory to PyMVPA’s root directory (across the corresponding subdirectories), the following reproduces the error directly:
>>
>> python -c "from mvpa2.clfs.libsvmc._svmc import C_SVC”
>>
>> Strangely enough, the following works for the failing PyMVPA installation (but not for the working one):
>>
>> python -c "from mvpa2.clfs.libsvmc._svmc import C_SVC_swigconstant”
>>
>> Digging a bit further, the mvpa2/clfs/libsvmc/svmc.py file differs between my “working” (generated using SWIG 3.0.2) and “failing” (SWIG 3.0.6) PyMVPA setup. One difference is that the working version has contents such as
>>
>> C_SVC = _svmc.C_SVC
>>
>> whereas the failing version has extra lines that includes “swigconstant”
>>
>> _svmc.C_SVC_swigconstant(_svmc)
>> C_SVC = _svmc.C_SVC
>>
>> (For completeness I’m including the full content of both versions below. )
>>
>> Tracing this back further, I compiled swig from source, both for the latest version on github and for version 3.0.0 (version 3.0.2 gave an error when compiling). When using 3.0.0, the import works fine; with 3.0.6 or the latest (3.0.7 development) it breaks.
>>
>>>
>>> I guess the problem might be related to compiling LibSVM. I vaguely remember there was some error messages with CLANG blah blah.
>>
>> I installed GCC 5.1 and get the same problem as when using CLANG.
>>
>> To summarize, the following worked for me to get libsvm to work on OS X Yosemite:
>>
>> - clone swig from https://github.com/swig/swig, then “git checkout -tag tags/tags/rel-3.0.0”
>> - in the swig directory, run “autoconf && ./configure && make && sudo make install” (although it gives an error when installing the man-pages due to missing yodl2man, the binaries are installed fine). This requires autoconf, automake and libconf.
>> - in the PyMVPA directory, run "python setup.py build_ext”
>> - copy the .so and .o files from the build directory to the PyMVPA root directory, for example in the PyMVPA root directory do "for ext in .so .o; do for i in `find build -iname "*${ext}"`; do j=`echo $i | cut -f3- -d/`; cp $i $j; done; done”
>>
>> If anyone can confirm that using an earlier version of SWIG fixes the problem, that would be great. In that case I can also raise the issue with the developers.
>>
>>
>>
>> (Below: contents of mvpa2/clfs/libsvmc/svmc.py for working and failing libsvm in PyMVPA)
>>
>> ################
>> # *Failing* mvpa2/clfs/libsvmc/svmc.py
>> ################
>>
>> # This file was automatically generated by SWIG (http://www.swig.org).
>> # Version 3.0.6
>> #
>> # Do not make changes to this file unless you know what you are doing--modify
>> # the SWIG interface file instead.
>>
>>
>>
>>
>>
>> from sys import version_info
>> if version_info >= (2, 6, 0):
>> def swig_import_helper():
>> from os.path import dirname
>> import imp
>> fp = None
>> try:
>> fp, pathname, description = imp.find_module('_svmc', [dirname(__file__)])
>> except ImportError:
>> import _svmc
>> return _svmc
>> if fp is not None:
>> try:
>> _mod = imp.load_module('_svmc', fp, pathname, description)
>> finally:
>> fp.close()
>> return _mod
>> _svmc = swig_import_helper()
>> del swig_import_helper
>> else:
>> import _svmc
>> del version_info
>> try:
>> _swig_property = property
>> except NameError:
>> pass # Python < 2.2 doesn't have 'property'.
>>
>>
>> def _swig_setattr_nondynamic(self, class_type, name, value, static=1):
>> if (name == "thisown"):
>> return self.this.own(value)
>> if (name == "this"):
>> if type(value).__name__ == 'SwigPyObject':
>> self.__dict__[name] = value
>> return
>> method = class_type.__swig_setmethods__.get(name, None)
>> if method:
>> return method(self, value)
>> if (not static):
>> if _newclass:
>> object.__setattr__(self, name, value)
>> else:
>> self.__dict__[name] = value
>> else:
>> raise AttributeError("You cannot add attributes to %s" % self)
>>
>>
>> def _swig_setattr(self, class_type, name, value):
>> return _swig_setattr_nondynamic(self, class_type, name, value, 0)
>>
>>
>> def _swig_getattr_nondynamic(self, class_type, name, static=1):
>> if (name == "thisown"):
>> return self.this.own()
>> method = class_type.__swig_getmethods__.get(name, None)
>> if method:
>> return method(self)
>> if (not static):
>> return object.__getattr__(self, name)
>> else:
>> raise AttributeError(name)
>>
>> def _swig_getattr(self, class_type, name):
>> return _swig_getattr_nondynamic(self, class_type, name, 0)
>>
>>
>> def _swig_repr(self):
>> try:
>> strthis = "proxy of " + self.this.__repr__()
>> except:
>> strthis = ""
>> return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
>>
>> try:
>> _object = object
>> _newclass = 1
>> except AttributeError:
>> class _object:
>> pass
>> _newclass = 0
>>
>>
>>
>> _svmc.__version___swigconstant(_svmc)
>> __version__ = _svmc.__version__
>>
>> _svmc.C_SVC_swigconstant(_svmc)
>> C_SVC = _svmc.C_SVC
>>
>> _svmc.NU_SVC_swigconstant(_svmc)
>> NU_SVC = _svmc.NU_SVC
>>
>> _svmc.ONE_CLASS_swigconstant(_svmc)
>> ONE_CLASS = _svmc.ONE_CLASS
>>
>> _svmc.EPSILON_SVR_swigconstant(_svmc)
>> EPSILON_SVR = _svmc.EPSILON_SVR
>>
>> _svmc.NU_SVR_swigconstant(_svmc)
>> NU_SVR = _svmc.NU_SVR
>>
>> _svmc.LINEAR_swigconstant(_svmc)
>> LINEAR = _svmc.LINEAR
>>
>> _svmc.POLY_swigconstant(_svmc)
>> POLY = _svmc.POLY
>>
>> _svmc.RBF_swigconstant(_svmc)
>> RBF = _svmc.RBF
>>
>> _svmc.SIGMOID_swigconstant(_svmc)
>> SIGMOID = _svmc.SIGMOID
>>
>> _svmc.PRECOMPUTED_swigconstant(_svmc)
>> PRECOMPUTED = _svmc.PRECOMPUTED
>> class svm_parameter(_object):
>> __swig_setmethods__ = {}
>> __setattr__ = lambda self, name, value: _swig_setattr(self, svm_parameter, name, value)
>> __swig_getmethods__ = {}
>> __getattr__ = lambda self, name: _swig_getattr(self, svm_parameter, name)
>> __repr__ = _swig_repr
>> __swig_setmethods__["svm_type"] = _svmc.svm_parameter_svm_type_set
>> __swig_getmethods__["svm_type"] = _svmc.svm_parameter_svm_type_get
>> if _newclass:
>> svm_type = _swig_property(_svmc.svm_parameter_svm_type_get, _svmc.svm_parameter_svm_type_set)
>> __swig_setmethods__["kernel_type"] = _svmc.svm_parameter_kernel_type_set
>> __swig_getmethods__["kernel_type"] = _svmc.svm_parameter_kernel_type_get
>> if _newclass:
>> kernel_type = _swig_property(_svmc.svm_parameter_kernel_type_get, _svmc.svm_parameter_kernel_type_set)
>> __swig_setmethods__["degree"] = _svmc.svm_parameter_degree_set
>> __swig_getmethods__["degree"] = _svmc.svm_parameter_degree_get
>> if _newclass:
>> degree = _swig_property(_svmc.svm_parameter_degree_get, _svmc.svm_parameter_degree_set)
>> __swig_setmethods__["gamma"] = _svmc.svm_parameter_gamma_set
>> __swig_getmethods__["gamma"] = _svmc.svm_parameter_gamma_get
>> if _newclass:
>> gamma = _swig_property(_svmc.svm_parameter_gamma_get, _svmc.svm_parameter_gamma_set)
>> __swig_setmethods__["coef0"] = _svmc.svm_parameter_coef0_set
>> __swig_getmethods__["coef0"] = _svmc.svm_parameter_coef0_get
>> if _newclass:
>> coef0 = _swig_property(_svmc.svm_parameter_coef0_get, _svmc.svm_parameter_coef0_set)
>> __swig_setmethods__["cache_size"] = _svmc.svm_parameter_cache_size_set
>> __swig_getmethods__["cache_size"] = _svmc.svm_parameter_cache_size_get
>> if _newclass:
>> cache_size = _swig_property(_svmc.svm_parameter_cache_size_get, _svmc.svm_parameter_cache_size_set)
>> __swig_setmethods__["eps"] = _svmc.svm_parameter_eps_set
>> __swig_getmethods__["eps"] = _svmc.svm_parameter_eps_get
>> if _newclass:
>> eps = _swig_property(_svmc.svm_parameter_eps_get, _svmc.svm_parameter_eps_set)
>> __swig_setmethods__["C"] = _svmc.svm_parameter_C_set
>> __swig_getmethods__["C"] = _svmc.svm_parameter_C_get
>> if _newclass:
>> C = _swig_property(_svmc.svm_parameter_C_get, _svmc.svm_parameter_C_set)
>> __swig_setmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_set
>> __swig_getmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_get
>> if _newclass:
>> nr_weight = _swig_property(_svmc.svm_parameter_nr_weight_get, _svmc.svm_parameter_nr_weight_set)
>> __swig_setmethods__["weight_label"] = _svmc.svm_parameter_weight_label_set
>> __swig_getmethods__["weight_label"] = _svmc.svm_parameter_weight_label_get
>> if _newclass:
>> weight_label = _swig_property(_svmc.svm_parameter_weight_label_get, _svmc.svm_parameter_weight_label_set)
>> __swig_setmethods__["weight"] = _svmc.svm_parameter_weight_set
>> __swig_getmethods__["weight"] = _svmc.svm_parameter_weight_get
>> if _newclass:
>> weight = _swig_property(_svmc.svm_parameter_weight_get, _svmc.svm_parameter_weight_set)
>> __swig_setmethods__["nu"] = _svmc.svm_parameter_nu_set
>> __swig_getmethods__["nu"] = _svmc.svm_parameter_nu_get
>> if _newclass:
>> nu = _swig_property(_svmc.svm_parameter_nu_get, _svmc.svm_parameter_nu_set)
>> __swig_setmethods__["p"] = _svmc.svm_parameter_p_set
>> __swig_getmethods__["p"] = _svmc.svm_parameter_p_get
>> if _newclass:
>> p = _swig_property(_svmc.svm_parameter_p_get, _svmc.svm_parameter_p_set)
>> __swig_setmethods__["shrinking"] = _svmc.svm_parameter_shrinking_set
>> __swig_getmethods__["shrinking"] = _svmc.svm_parameter_shrinking_get
>> if _newclass:
>> shrinking = _swig_property(_svmc.svm_parameter_shrinking_get, _svmc.svm_parameter_shrinking_set)
>> __swig_setmethods__["probability"] = _svmc.svm_parameter_probability_set
>> __swig_getmethods__["probability"] = _svmc.svm_parameter_probability_get
>> if _newclass:
>> probability = _swig_property(_svmc.svm_parameter_probability_get, _svmc.svm_parameter_probability_set)
>>
>> def __init__(self):
>> this = _svmc.new_svm_parameter()
>> try:
>> self.this.append(this)
>> except:
>> self.this = this
>> __swig_destroy__ = _svmc.delete_svm_parameter
>> __del__ = lambda self: None
>> svm_parameter_swigregister = _svmc.svm_parameter_swigregister
>> svm_parameter_swigregister(svm_parameter)
>>
>> class svm_problem(_object):
>> __swig_setmethods__ = {}
>> __setattr__ = lambda self, name, value: _swig_setattr(self, svm_problem, name, value)
>> __swig_getmethods__ = {}
>> __getattr__ = lambda self, name: _swig_getattr(self, svm_problem, name)
>> __repr__ = _swig_repr
>> __swig_setmethods__["l"] = _svmc.svm_problem_l_set
>> __swig_getmethods__["l"] = _svmc.svm_problem_l_get
>> if _newclass:
>> l = _swig_property(_svmc.svm_problem_l_get, _svmc.svm_problem_l_set)
>> __swig_setmethods__["y"] = _svmc.svm_problem_y_set
>> __swig_getmethods__["y"] = _svmc.svm_problem_y_get
>> if _newclass:
>> y = _swig_property(_svmc.svm_problem_y_get, _svmc.svm_problem_y_set)
>> __swig_setmethods__["x"] = _svmc.svm_problem_x_set
>> __swig_getmethods__["x"] = _svmc.svm_problem_x_get
>> if _newclass:
>> x = _swig_property(_svmc.svm_problem_x_get, _svmc.svm_problem_x_set)
>>
>> def __init__(self):
>> this = _svmc.new_svm_problem()
>> try:
>> self.this.append(this)
>> except:
>> self.this = this
>> __swig_destroy__ = _svmc.delete_svm_problem
>> __del__ = lambda self: None
>> svm_problem_swigregister = _svmc.svm_problem_swigregister
>> svm_problem_swigregister(svm_problem)
>>
>> class svm_model(_object):
>> __swig_setmethods__ = {}
>> __setattr__ = lambda self, name, value: _swig_setattr(self, svm_model, name, value)
>> __swig_getmethods__ = {}
>> __getattr__ = lambda self, name: _swig_getattr(self, svm_model, name)
>> __repr__ = _swig_repr
>> __swig_setmethods__["param"] = _svmc.svm_model_param_set
>> __swig_getmethods__["param"] = _svmc.svm_model_param_get
>> if _newclass:
>> param = _swig_property(_svmc.svm_model_param_get, _svmc.svm_model_param_set)
>> __swig_setmethods__["nr_class"] = _svmc.svm_model_nr_class_set
>> __swig_getmethods__["nr_class"] = _svmc.svm_model_nr_class_get
>> if _newclass:
>> nr_class = _swig_property(_svmc.svm_model_nr_class_get, _svmc.svm_model_nr_class_set)
>> __swig_setmethods__["l"] = _svmc.svm_model_l_set
>> __swig_getmethods__["l"] = _svmc.svm_model_l_get
>> if _newclass:
>> l = _swig_property(_svmc.svm_model_l_get, _svmc.svm_model_l_set)
>> __swig_setmethods__["SV"] = _svmc.svm_model_SV_set
>> __swig_getmethods__["SV"] = _svmc.svm_model_SV_get
>> if _newclass:
>> SV = _swig_property(_svmc.svm_model_SV_get, _svmc.svm_model_SV_set)
>> __swig_setmethods__["sv_coef"] = _svmc.svm_model_sv_coef_set
>> __swig_getmethods__["sv_coef"] = _svmc.svm_model_sv_coef_get
>> if _newclass:
>> sv_coef = _swig_property(_svmc.svm_model_sv_coef_get, _svmc.svm_model_sv_coef_set)
>> __swig_setmethods__["rho"] = _svmc.svm_model_rho_set
>> __swig_getmethods__["rho"] = _svmc.svm_model_rho_get
>> if _newclass:
>> rho = _swig_property(_svmc.svm_model_rho_get, _svmc.svm_model_rho_set)
>> __swig_setmethods__["probA"] = _svmc.svm_model_probA_set
>> __swig_getmethods__["probA"] = _svmc.svm_model_probA_get
>> if _newclass:
>> probA = _swig_property(_svmc.svm_model_probA_get, _svmc.svm_model_probA_set)
>> __swig_setmethods__["probB"] = _svmc.svm_model_probB_set
>> __swig_getmethods__["probB"] = _svmc.svm_model_probB_get
>> if _newclass:
>> probB = _swig_property(_svmc.svm_model_probB_get, _svmc.svm_model_probB_set)
>> __swig_setmethods__["label"] = _svmc.svm_model_label_set
>> __swig_getmethods__["label"] = _svmc.svm_model_label_get
>> if _newclass:
>> label = _swig_property(_svmc.svm_model_label_get, _svmc.svm_model_label_set)
>> __swig_setmethods__["nSV"] = _svmc.svm_model_nSV_set
>> __swig_getmethods__["nSV"] = _svmc.svm_model_nSV_get
>> if _newclass:
>> nSV = _swig_property(_svmc.svm_model_nSV_get, _svmc.svm_model_nSV_set)
>> __swig_setmethods__["free_sv"] = _svmc.svm_model_free_sv_set
>> __swig_getmethods__["free_sv"] = _svmc.svm_model_free_sv_get
>> if _newclass:
>> free_sv = _swig_property(_svmc.svm_model_free_sv_get, _svmc.svm_model_free_sv_set)
>>
>> def __init__(self):
>> this = _svmc.new_svm_model()
>> try:
>> self.this.append(this)
>> except:
>> self.this = this
>> __swig_destroy__ = _svmc.delete_svm_model
>> __del__ = lambda self: None
>> svm_model_swigregister = _svmc.svm_model_swigregister
>> svm_model_swigregister(svm_model)
>>
>>
>> def svm_set_verbosity(verbosity_flag):
>> return _svmc.svm_set_verbosity(verbosity_flag)
>> svm_set_verbosity = _svmc.svm_set_verbosity
>>
>> def svm_train(prob, param):
>> return _svmc.svm_train(prob, param)
>> svm_train = _svmc.svm_train
>>
>> def svm_cross_validation(prob, param, nr_fold, target):
>> return _svmc.svm_cross_validation(prob, param, nr_fold, target)
>> svm_cross_validation = _svmc.svm_cross_validation
>>
>> def svm_save_model(model_file_name, model):
>> return _svmc.svm_save_model(model_file_name, model)
>> svm_save_model = _svmc.svm_save_model
>>
>> def svm_load_model(model_file_name):
>> return _svmc.svm_load_model(model_file_name)
>> svm_load_model = _svmc.svm_load_model
>>
>> def svm_get_svm_type(model):
>> return _svmc.svm_get_svm_type(model)
>> svm_get_svm_type = _svmc.svm_get_svm_type
>>
>> def svm_get_nr_class(model):
>> return _svmc.svm_get_nr_class(model)
>> svm_get_nr_class = _svmc.svm_get_nr_class
>>
>> def svm_get_labels(model, label):
>> return _svmc.svm_get_labels(model, label)
>> svm_get_labels = _svmc.svm_get_labels
>>
>> def svm_get_svr_probability(model):
>> return _svmc.svm_get_svr_probability(model)
>> svm_get_svr_probability = _svmc.svm_get_svr_probability
>>
>> def svm_predict_values(model, x, decvalue):
>> return _svmc.svm_predict_values(model, x, decvalue)
>> svm_predict_values = _svmc.svm_predict_values
>>
>> def svm_predict(model, x):
>> return _svmc.svm_predict(model, x)
>> svm_predict = _svmc.svm_predict
>>
>> def svm_predict_probability(model, x, prob_estimates):
>> return _svmc.svm_predict_probability(model, x, prob_estimates)
>> svm_predict_probability = _svmc.svm_predict_probability
>>
>> def svm_check_parameter(prob, param):
>> return _svmc.svm_check_parameter(prob, param)
>> svm_check_parameter = _svmc.svm_check_parameter
>>
>> def svm_check_probability_model(model):
>> return _svmc.svm_check_probability_model(model)
>> svm_check_probability_model = _svmc.svm_check_probability_model
>>
>> def svm_node_matrix2numpy_array(matrix, rows, cols):
>> return _svmc.svm_node_matrix2numpy_array(matrix, rows, cols)
>> svm_node_matrix2numpy_array = _svmc.svm_node_matrix2numpy_array
>>
>> def doubleppcarray2numpy_array(data, rows, cols):
>> return _svmc.doubleppcarray2numpy_array(data, rows, cols)
>> doubleppcarray2numpy_array = _svmc.doubleppcarray2numpy_array
>>
>> def new_int(nelements):
>> return _svmc.new_int(nelements)
>> new_int = _svmc.new_int
>>
>> def delete_int(ary):
>> return _svmc.delete_int(ary)
>> delete_int = _svmc.delete_int
>>
>> def int_getitem(ary, index):
>> return _svmc.int_getitem(ary, index)
>> int_getitem = _svmc.int_getitem
>>
>> def int_setitem(ary, index, value):
>> return _svmc.int_setitem(ary, index, value)
>> int_setitem = _svmc.int_setitem
>>
>> def new_double(nelements):
>> return _svmc.new_double(nelements)
>> new_double = _svmc.new_double
>>
>> def delete_double(ary):
>> return _svmc.delete_double(ary)
>> delete_double = _svmc.delete_double
>>
>> def double_getitem(ary, index):
>> return _svmc.double_getitem(ary, index)
>> double_getitem = _svmc.double_getitem
>>
>> def double_setitem(ary, index, value):
>> return _svmc.double_setitem(ary, index, value)
>> double_setitem = _svmc.double_setitem
>>
>> def svm_node_array(size):
>> return _svmc.svm_node_array(size)
>> svm_node_array = _svmc.svm_node_array
>>
>> def svm_node_array_set(*args):
>> return _svmc.svm_node_array_set(*args)
>> svm_node_array_set = _svmc.svm_node_array_set
>>
>> def svm_node_array_destroy(array):
>> return _svmc.svm_node_array_destroy(array)
>> svm_node_array_destroy = _svmc.svm_node_array_destroy
>>
>> def svm_node_matrix(size):
>> return _svmc.svm_node_matrix(size)
>> svm_node_matrix = _svmc.svm_node_matrix
>>
>> def svm_node_matrix_set(matrix, i, array):
>> return _svmc.svm_node_matrix_set(matrix, i, array)
>> svm_node_matrix_set = _svmc.svm_node_matrix_set
>>
>> def svm_node_matrix_destroy(matrix):
>> return _svmc.svm_node_matrix_destroy(matrix)
>> svm_node_matrix_destroy = _svmc.svm_node_matrix_destroy
>>
>> def svm_destroy_model_helper(model_ptr):
>> return _svmc.svm_destroy_model_helper(model_ptr)
>> svm_destroy_model_helper = _svmc.svm_destroy_model_helper
>> # This file is compatible with both classic and new-style classes.
>>
>>
>>
>>
>>
>> ################
>> # *Working* mvpa2/clfs/libsvmc/svmc.py
>> ################
>>
>>
>> # This file was automatically generated by SWIG (http://www.swig.org).
>> # Version 3.0.2
>> #
>> # Do not make changes to this file unless you know what you are doing--modify
>> # the SWIG interface file instead.
>>
>>
>>
>>
>>
>> from sys import version_info
>> if version_info >= (2,6,0):
>> def swig_import_helper():
>> from os.path import dirname
>> import imp
>> fp = None
>> try:
>> fp, pathname, description = imp.find_module('_svmc', [dirname(__file__)])
>> except ImportError:
>> import _svmc
>> return _svmc
>> if fp is not None:
>> try:
>> _mod = imp.load_module('_svmc', fp, pathname, description)
>> finally:
>> fp.close()
>> return _mod
>> _svmc = swig_import_helper()
>> del swig_import_helper
>> else:
>> import _svmc
>> del version_info
>> try:
>> _swig_property = property
>> except NameError:
>> pass # Python < 2.2 doesn't have 'property'.
>> def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
>> if (name == "thisown"): return self.this.own(value)
>> if (name == "this"):
>> if type(value).__name__ == 'SwigPyObject':
>> self.__dict__[name] = value
>> return
>> method = class_type.__swig_setmethods__.get(name,None)
>> if method: return method(self,value)
>> if (not static):
>> self.__dict__[name] = value
>> else:
>> raise AttributeError("You cannot add attributes to %s" % self)
>>
>> def _swig_setattr(self,class_type,name,value):
>> return _swig_setattr_nondynamic(self,class_type,name,value,0)
>>
>> def _swig_getattr(self,class_type,name):
>> if (name == "thisown"): return self.this.own()
>> method = class_type.__swig_getmethods__.get(name,None)
>> if method: return method(self)
>> raise AttributeError(name)
>>
>> def _swig_repr(self):
>> try: strthis = "proxy of " + self.this.__repr__()
>> except: strthis = ""
>> return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
>>
>> try:
>> _object = object
>> _newclass = 1
>> except AttributeError:
>> class _object : pass
>> _newclass = 0
>>
>>
>> __version__ = _svmc.__version__
>> C_SVC = _svmc.C_SVC
>> NU_SVC = _svmc.NU_SVC
>> ONE_CLASS = _svmc.ONE_CLASS
>> EPSILON_SVR = _svmc.EPSILON_SVR
>> NU_SVR = _svmc.NU_SVR
>> LINEAR = _svmc.LINEAR
>> POLY = _svmc.POLY
>> RBF = _svmc.RBF
>> SIGMOID = _svmc.SIGMOID
>> PRECOMPUTED = _svmc.PRECOMPUTED
>> class svm_parameter(_object):
>> __swig_setmethods__ = {}
>> __setattr__ = lambda self, name, value: _swig_setattr(self, svm_parameter, name, value)
>> __swig_getmethods__ = {}
>> __getattr__ = lambda self, name: _swig_getattr(self, svm_parameter, name)
>> __repr__ = _swig_repr
>> __swig_setmethods__["svm_type"] = _svmc.svm_parameter_svm_type_set
>> __swig_getmethods__["svm_type"] = _svmc.svm_parameter_svm_type_get
>> if _newclass:svm_type = _swig_property(_svmc.svm_parameter_svm_type_get, _svmc.svm_parameter_svm_type_set)
>> __swig_setmethods__["kernel_type"] = _svmc.svm_parameter_kernel_type_set
>> __swig_getmethods__["kernel_type"] = _svmc.svm_parameter_kernel_type_get
>> if _newclass:kernel_type = _swig_property(_svmc.svm_parameter_kernel_type_get, _svmc.svm_parameter_kernel_type_set)
>> __swig_setmethods__["degree"] = _svmc.svm_parameter_degree_set
>> __swig_getmethods__["degree"] = _svmc.svm_parameter_degree_get
>> if _newclass:degree = _swig_property(_svmc.svm_parameter_degree_get, _svmc.svm_parameter_degree_set)
>> __swig_setmethods__["gamma"] = _svmc.svm_parameter_gamma_set
>> __swig_getmethods__["gamma"] = _svmc.svm_parameter_gamma_get
>> if _newclass:gamma = _swig_property(_svmc.svm_parameter_gamma_get, _svmc.svm_parameter_gamma_set)
>> __swig_setmethods__["coef0"] = _svmc.svm_parameter_coef0_set
>> __swig_getmethods__["coef0"] = _svmc.svm_parameter_coef0_get
>> if _newclass:coef0 = _swig_property(_svmc.svm_parameter_coef0_get, _svmc.svm_parameter_coef0_set)
>> __swig_setmethods__["cache_size"] = _svmc.svm_parameter_cache_size_set
>> __swig_getmethods__["cache_size"] = _svmc.svm_parameter_cache_size_get
>> if _newclass:cache_size = _swig_property(_svmc.svm_parameter_cache_size_get, _svmc.svm_parameter_cache_size_set)
>> __swig_setmethods__["eps"] = _svmc.svm_parameter_eps_set
>> __swig_getmethods__["eps"] = _svmc.svm_parameter_eps_get
>> if _newclass:eps = _swig_property(_svmc.svm_parameter_eps_get, _svmc.svm_parameter_eps_set)
>> __swig_setmethods__["C"] = _svmc.svm_parameter_C_set
>> __swig_getmethods__["C"] = _svmc.svm_parameter_C_get
>> if _newclass:C = _swig_property(_svmc.svm_parameter_C_get, _svmc.svm_parameter_C_set)
>> __swig_setmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_set
>> __swig_getmethods__["nr_weight"] = _svmc.svm_parameter_nr_weight_get
>> if _newclass:nr_weight = _swig_property(_svmc.svm_parameter_nr_weight_get, _svmc.svm_parameter_nr_weight_set)
>> __swig_setmethods__["weight_label"] = _svmc.svm_parameter_weight_label_set
>> __swig_getmethods__["weight_label"] = _svmc.svm_parameter_weight_label_get
>> if _newclass:weight_label = _swig_property(_svmc.svm_parameter_weight_label_get, _svmc.svm_parameter_weight_label_set)
>> __swig_setmethods__["weight"] = _svmc.svm_parameter_weight_set
>> __swig_getmethods__["weight"] = _svmc.svm_parameter_weight_get
>> if _newclass:weight = _swig_property(_svmc.svm_parameter_weight_get, _svmc.svm_parameter_weight_set)
>> __swig_setmethods__["nu"] = _svmc.svm_parameter_nu_set
>> __swig_getmethods__["nu"] = _svmc.svm_parameter_nu_get
>> if _newclass:nu = _swig_property(_svmc.svm_parameter_nu_get, _svmc.svm_parameter_nu_set)
>> __swig_setmethods__["p"] = _svmc.svm_parameter_p_set
>> __swig_getmethods__["p"] = _svmc.svm_parameter_p_get
>> if _newclass:p = _swig_property(_svmc.svm_parameter_p_get, _svmc.svm_parameter_p_set)
>> __swig_setmethods__["shrinking"] = _svmc.svm_parameter_shrinking_set
>> __swig_getmethods__["shrinking"] = _svmc.svm_parameter_shrinking_get
>> if _newclass:shrinking = _swig_property(_svmc.svm_parameter_shrinking_get, _svmc.svm_parameter_shrinking_set)
>> __swig_setmethods__["probability"] = _svmc.svm_parameter_probability_set
>> __swig_getmethods__["probability"] = _svmc.svm_parameter_probability_get
>> if _newclass:probability = _swig_property(_svmc.svm_parameter_probability_get, _svmc.svm_parameter_probability_set)
>> def __init__(self):
>> this = _svmc.new_svm_parameter()
>> try: self.this.append(this)
>> except: self.this = this
>> __swig_destroy__ = _svmc.delete_svm_parameter
>> __del__ = lambda self : None;
>> svm_parameter_swigregister = _svmc.svm_parameter_swigregister
>> svm_parameter_swigregister(svm_parameter)
>>
>> class svm_problem(_object):
>> __swig_setmethods__ = {}
>> __setattr__ = lambda self, name, value: _swig_setattr(self, svm_problem, name, value)
>> __swig_getmethods__ = {}
>> __getattr__ = lambda self, name: _swig_getattr(self, svm_problem, name)
>> __repr__ = _swig_repr
>> __swig_setmethods__["l"] = _svmc.svm_problem_l_set
>> __swig_getmethods__["l"] = _svmc.svm_problem_l_get
>> if _newclass:l = _swig_property(_svmc.svm_problem_l_get, _svmc.svm_problem_l_set)
>> __swig_setmethods__["y"] = _svmc.svm_problem_y_set
>> __swig_getmethods__["y"] = _svmc.svm_problem_y_get
>> if _newclass:y = _swig_property(_svmc.svm_problem_y_get, _svmc.svm_problem_y_set)
>> __swig_setmethods__["x"] = _svmc.svm_problem_x_set
>> __swig_getmethods__["x"] = _svmc.svm_problem_x_get
>> if _newclass:x = _swig_property(_svmc.svm_problem_x_get, _svmc.svm_problem_x_set)
>> def __init__(self):
>> this = _svmc.new_svm_problem()
>> try: self.this.append(this)
>> except: self.this = this
>> __swig_destroy__ = _svmc.delete_svm_problem
>> __del__ = lambda self : None;
>> svm_problem_swigregister = _svmc.svm_problem_swigregister
>> svm_problem_swigregister(svm_problem)
>>
>> class svm_model(_object):
>> __swig_setmethods__ = {}
>> __setattr__ = lambda self, name, value: _swig_setattr(self, svm_model, name, value)
>> __swig_getmethods__ = {}
>> __getattr__ = lambda self, name: _swig_getattr(self, svm_model, name)
>> __repr__ = _swig_repr
>> __swig_setmethods__["param"] = _svmc.svm_model_param_set
>> __swig_getmethods__["param"] = _svmc.svm_model_param_get
>> if _newclass:param = _swig_property(_svmc.svm_model_param_get, _svmc.svm_model_param_set)
>> __swig_setmethods__["nr_class"] = _svmc.svm_model_nr_class_set
>> __swig_getmethods__["nr_class"] = _svmc.svm_model_nr_class_get
>> if _newclass:nr_class = _swig_property(_svmc.svm_model_nr_class_get, _svmc.svm_model_nr_class_set)
>> __swig_setmethods__["l"] = _svmc.svm_model_l_set
>> __swig_getmethods__["l"] = _svmc.svm_model_l_get
>> if _newclass:l = _swig_property(_svmc.svm_model_l_get, _svmc.svm_model_l_set)
>> __swig_setmethods__["SV"] = _svmc.svm_model_SV_set
>> __swig_getmethods__["SV"] = _svmc.svm_model_SV_get
>> if _newclass:SV = _swig_property(_svmc.svm_model_SV_get, _svmc.svm_model_SV_set)
>> __swig_setmethods__["sv_coef"] = _svmc.svm_model_sv_coef_set
>> __swig_getmethods__["sv_coef"] = _svmc.svm_model_sv_coef_get
>> if _newclass:sv_coef = _swig_property(_svmc.svm_model_sv_coef_get, _svmc.svm_model_sv_coef_set)
>> __swig_setmethods__["rho"] = _svmc.svm_model_rho_set
>> __swig_getmethods__["rho"] = _svmc.svm_model_rho_get
>> if _newclass:rho = _swig_property(_svmc.svm_model_rho_get, _svmc.svm_model_rho_set)
>> __swig_setmethods__["probA"] = _svmc.svm_model_probA_set
>> __swig_getmethods__["probA"] = _svmc.svm_model_probA_get
>> if _newclass:probA = _swig_property(_svmc.svm_model_probA_get, _svmc.svm_model_probA_set)
>> __swig_setmethods__["probB"] = _svmc.svm_model_probB_set
>> __swig_getmethods__["probB"] = _svmc.svm_model_probB_get
>> if _newclass:probB = _swig_property(_svmc.svm_model_probB_get, _svmc.svm_model_probB_set)
>> __swig_setmethods__["label"] = _svmc.svm_model_label_set
>> __swig_getmethods__["label"] = _svmc.svm_model_label_get
>> if _newclass:label = _swig_property(_svmc.svm_model_label_get, _svmc.svm_model_label_set)
>> __swig_setmethods__["nSV"] = _svmc.svm_model_nSV_set
>> __swig_getmethods__["nSV"] = _svmc.svm_model_nSV_get
>> if _newclass:nSV = _swig_property(_svmc.svm_model_nSV_get, _svmc.svm_model_nSV_set)
>> __swig_setmethods__["free_sv"] = _svmc.svm_model_free_sv_set
>> __swig_getmethods__["free_sv"] = _svmc.svm_model_free_sv_get
>> if _newclass:free_sv = _swig_property(_svmc.svm_model_free_sv_get, _svmc.svm_model_free_sv_set)
>> def __init__(self):
>> this = _svmc.new_svm_model()
>> try: self.this.append(this)
>> except: self.this = this
>> __swig_destroy__ = _svmc.delete_svm_model
>> __del__ = lambda self : None;
>> svm_model_swigregister = _svmc.svm_model_swigregister
>> svm_model_swigregister(svm_model)
>>
>>
>> def svm_set_verbosity(*args):
>> return _svmc.svm_set_verbosity(*args)
>> svm_set_verbosity = _svmc.svm_set_verbosity
>>
>> def svm_train(*args):
>> return _svmc.svm_train(*args)
>> svm_train = _svmc.svm_train
>>
>> def svm_cross_validation(*args):
>> return _svmc.svm_cross_validation(*args)
>> svm_cross_validation = _svmc.svm_cross_validation
>>
>> def svm_save_model(*args):
>> return _svmc.svm_save_model(*args)
>> svm_save_model = _svmc.svm_save_model
>>
>> def svm_load_model(*args):
>> return _svmc.svm_load_model(*args)
>> svm_load_model = _svmc.svm_load_model
>>
>> def svm_get_svm_type(*args):
>> return _svmc.svm_get_svm_type(*args)
>> svm_get_svm_type = _svmc.svm_get_svm_type
>>
>> def svm_get_nr_class(*args):
>> return _svmc.svm_get_nr_class(*args)
>> svm_get_nr_class = _svmc.svm_get_nr_class
>>
>> def svm_get_labels(*args):
>> return _svmc.svm_get_labels(*args)
>> svm_get_labels = _svmc.svm_get_labels
>>
>> def svm_get_svr_probability(*args):
>> return _svmc.svm_get_svr_probability(*args)
>> svm_get_svr_probability = _svmc.svm_get_svr_probability
>>
>> def svm_predict_values(*args):
>> return _svmc.svm_predict_values(*args)
>> svm_predict_values = _svmc.svm_predict_values
>>
>> def svm_predict(*args):
>> return _svmc.svm_predict(*args)
>> svm_predict = _svmc.svm_predict
>>
>> def svm_predict_probability(*args):
>> return _svmc.svm_predict_probability(*args)
>> svm_predict_probability = _svmc.svm_predict_probability
>>
>> def svm_check_parameter(*args):
>> return _svmc.svm_check_parameter(*args)
>> svm_check_parameter = _svmc.svm_check_parameter
>>
>> def svm_check_probability_model(*args):
>> return _svmc.svm_check_probability_model(*args)
>> svm_check_probability_model = _svmc.svm_check_probability_model
>>
>> def svm_node_matrix2numpy_array(*args):
>> return _svmc.svm_node_matrix2numpy_array(*args)
>> svm_node_matrix2numpy_array = _svmc.svm_node_matrix2numpy_array
>>
>> def doubleppcarray2numpy_array(*args):
>> return _svmc.doubleppcarray2numpy_array(*args)
>> doubleppcarray2numpy_array = _svmc.doubleppcarray2numpy_array
>>
>> def new_int(*args):
>> return _svmc.new_int(*args)
>> new_int = _svmc.new_int
>>
>> def delete_int(*args):
>> return _svmc.delete_int(*args)
>> delete_int = _svmc.delete_int
>>
>> def int_getitem(*args):
>> return _svmc.int_getitem(*args)
>> int_getitem = _svmc.int_getitem
>>
>> def int_setitem(*args):
>> return _svmc.int_setitem(*args)
>> int_setitem = _svmc.int_setitem
>>
>> def new_double(*args):
>> return _svmc.new_double(*args)
>> new_double = _svmc.new_double
>>
>> def delete_double(*args):
>> return _svmc.delete_double(*args)
>> delete_double = _svmc.delete_double
>>
>> def double_getitem(*args):
>> return _svmc.double_getitem(*args)
>> double_getitem = _svmc.double_getitem
>>
>> def double_setitem(*args):
>> return _svmc.double_setitem(*args)
>> double_setitem = _svmc.double_setitem
>>
>> def svm_node_array(*args):
>> return _svmc.svm_node_array(*args)
>> svm_node_array = _svmc.svm_node_array
>>
>> def svm_node_array_set(*args):
>> return _svmc.svm_node_array_set(*args)
>> svm_node_array_set = _svmc.svm_node_array_set
>>
>> def svm_node_array_destroy(*args):
>> return _svmc.svm_node_array_destroy(*args)
>> svm_node_array_destroy = _svmc.svm_node_array_destroy
>>
>> def svm_node_matrix(*args):
>> return _svmc.svm_node_matrix(*args)
>> svm_node_matrix = _svmc.svm_node_matrix
>>
>> def svm_node_matrix_set(*args):
>> return _svmc.svm_node_matrix_set(*args)
>> svm_node_matrix_set = _svmc.svm_node_matrix_set
>>
>> def svm_node_matrix_destroy(*args):
>> return _svmc.svm_node_matrix_destroy(*args)
>> svm_node_matrix_destroy = _svmc.svm_node_matrix_destroy
>>
>> def svm_destroy_model_helper(*args):
>> return _svmc.svm_destroy_model_helper(*args)
>> svm_destroy_model_helper = _svmc.svm_destroy_model_helper
>> # This file is compatible with both classic and new-style classes.
>>
>>
>> _______________________________________________
>> Pkg-ExpPsy-PyMVPA mailing list
>> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
More information about the Pkg-ExpPsy-PyMVPA
mailing list