[pymvpa] Using PyMVPA for preprocessing only

Adrian Smith smithadr at sonoma.edu
Sun Mar 6 23:27:06 UTC 2016

I’m a student researcher working with the Haxby ds105 data from OpenfMRI. I’m not planning on using PyMVPA for my whole analysis of the data, but wanted to use it in order to denoise, mask and detrend the data. What I want is to input a 4D NIfTI (or group of NIfTIs), run some preprocessing on each file like shown in http://www.pymvpa.org/tutorial_mappers.html <http://www.pymvpa.org/tutorial_mappers.html>, and then output a processed NIfTI for each input NIfTI. How can I do that with PyMVPA?
I’ve read through the tutorial, but it is written for someone trying to operate their entire pipeline within PyMVPA, and I couldn’t find anything that was what I am looking for.
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