[hdf5] branch master updated (39f9405 -> 5eb9ff6)

Gilles Filippini pini at debian.org
Sat Nov 26 22:26:55 UTC 2016


This is an automated email from the git hooks/post-receive script.

pini pushed a change to branch master
in repository hdf5.

      from  39f9405   Upload release 1.8.16+docs-8 to unstable
      adds  eaf03b5   Fix debian/watch to show every available releases
      adds  e651e5e   Update debian/orig-tar.sh for releases 1.10.*
      adds  20242a5   Handle html/cpplus_RM* removal via debian/orig-tar.exclude
      adds  5f94294   debian/orig-tar.exclude: update excludes for release 1.10
      adds  ffa0953   Imported Upstream version 1.10.0~alpha0+docs
      adds  5632732   Merge tag 'upstream/1.10.0_alpha0+docs' into master-1.10
      adds  fdb9b48   Refresh patches
      adds  984d164   Prepare import of upstream 1.10.0~alpha1
      adds  6edb479   Imported Upstream version 1.10.0~alpha1+docs
      adds  06508dd   Merge tag 'upstream/1.10.0_alpha1+docs' into master-1.10
      adds  edd5e82   Mostly revert c28d463.
      adds  b378e02   Refresh patches
      adds  24c2388   Drop patch format-not-a-string-literal-and-no-format-arguments.patch
      adds  c91efee   debian/rules: fix soname retrieval
      adds  c4bbd13   Refresh lintian-overrides
      adds  9bd0ad9   Update debian/control
      adds  6f3f507   debian/changelog update
      adds  25fd85a   Drop patch hurd-sigsetjmp.patch not needed anymore.
      adds  cf21c15   debian/orig-tar.exclude: remove libtool overwritten files
      adds  ce504bb   Imported Upstream version 1.10.0~alpha1+docs
      adds  cf2aab3   Merge tag 'upstream/1.10.0_alpha1+docs' into master-1.10
      adds  48454c5   Improve symbols files helpers
      adds  6ea5d57   Update symbols files - stage 0
      adds  0b3ab4c   Update symbols files - first pass
      adds  b12b870   Update symbols files - second and last pass
      adds  19a5b34   Update Vcs-* URLs to use HTTPS.
      adds  d8b05a4   debian/watch: fix for alpha/beta releases
      adds  4bd123d   Merge branch 'master' into master-1.10
      adds  29eb5ea   Yet another uscan files fix
      adds  e21bd7a   Imported Upstream version 1.10.0~pre1+docs
      adds  6e70c21   Merge tag 'upstream/1.10.0_pre1+docs' into master-1.10
      adds  c614bf2   First successful build of 1.10~pre1+docs
      adds  661316e   Update symbols files
      adds  d4a7148   Merge branch 'master' into master-1.10
      adds  5c59b10   Imported Upstream version 1.10.0~pre2+docs
      adds  14ee91e   Merge tag 'upstream/1.10.0_pre2+docs' into master-1.10
      adds  6791925   Refresh patches for release 1.10.0~pre2+docs-1
      adds  add911a   debian/watch: use dirversionmangle
      adds  545d5da   Prepare import of upstream release 1.10.0
      adds  09d03ac   Imported Upstream version 1.10.0+docs
      adds  53d558e   Merge tag 'upstream/1.10.0+docs' into master-1.10
      adds  649ddad   Bump Standards-Version to 3.9.7
      adds  6d556c4   debian/rules: clean: don't rm java/test/h5ex_g_iterate.orig
      adds  cef48f0   Upload release 1.10.0+docs-1~exp1 to experimental
      adds  5f49dba   Drop *-dbg packages
      adds  c14ffd4   debian/rule: cleanup
      adds  12e70ed   Update symbols files
      adds  a489685   Migrate debian/rules to dh
      adds  fc94b34   debian/control: Build-Depends-Indep: doxygen, php5-cli
      adds  707c16c   Symbols files: start fixing arch-specific symols
      adds  769c7d4   Upload release 1.10.0+docs-1~exp2 to experimental
      adds  16b7835   debian/control.in: set Build-Depends-Indep
      adds  c74d243   Symbols files: cleanup missing symbols
      adds  0202805   Symbols files: fix arch i386
      adds  f10cb11   Symbols files: fix arch x32
      adds  9ad0f27   Symbols files: fix arch arm64
      adds  738e166   Symbols files: fix arch armhf
      adds  e23f03a   Symbols files: fix arch armel
      adds  3cb4e09   Symbols files: fix arch mipsel
      adds  28286b0   Symbols files: fix arch mips64el
      adds  0846574   Symbols files: fix arch mips
      adds  4dca556   Symbols files: fix arch s390x
      adds  18a118d   Symbols files: fix arch ppc64el
      adds  e12395f   Symbols files: fix arch powerpc
      adds  940efeb   Upload release 1.10.0+docs-1~exp3 to experimental
      adds  d0ebddd   Symbols files: fix archs alpha, kfreebsd-i386 and ppc64
      adds  c11183e   Symbols files: fix arch hppa
      adds  c255b00   Build-Depends-Indep: php-cli
      adds  088765b   Symbols files: fix arch sparc64
      adds  5d18cb4   Symbols files: fix arch hurd-i386
      adds  2b9040c   Symbols files: set same arch flags for openmpi and mpich
      adds  1b7de3c   Symbols files: fix arch m68k
      adds  9f83385   debian/changelog update
      adds  4c5962c   Prepare import of upstream release 1.10.0-patch1
      adds  d2a3490   Imported Upstream version 1.10.0-patch1+docs
      adds  6913d46   Merge tag 'upstream/1.10.0-patch1+docs' into master-1.10
      adds  064331f   Update symbols files
      adds  257595b   Standars-Version: 3.9.8
      adds  3533146   Upload release 1.10.0-patch1+docs-1~exp1 to experimental
      adds  b4eac7e   Symbols files: ignore -patch and ~(alpha|pre)
      adds  1a7ad39   Update symbols files
      adds  68c0d3a   Upload release 1.10.0-patch1+docs-1~exp2 to experimental
      adds  5f00a9e   default plugins dir /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/plugins
      adds  3e6c329   Update symbols files
      adds  389a053   Upload release 1.10.0-patch1+docs-1~exp3 to experimental
      adds  9edc7e6   Fix libhdf5-mpi-dev Depends field
       new  5eb9ff6   Merge tag 'debian/1.10.0-patch1+docs-1_exp4'

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ACKNOWLEDGMENTS                                    |    14 +-
 CMakeInstallation.cmake                            |    36 +-
 CMakeLists.txt                                     |   370 +-
 COPYING                                            |     8 +-
 CTestConfig.cmake                                  |    10 +-
 MANIFEST                                           |  1154 +-
 Makefile.am                                        |    11 +-
 Makefile.in                                        |   154 +-
 README.txt                                         |     2 +-
 aclocal.m4                                         |  8672 +-------
 acsite.m4                                          |    84 -
 autogen.sh                                         |   302 +
 bin/chkmanifest                                    |    16 +
 bin/cmakehdf5                                      |   388 +-
 bin/compile                                        |   370 +-
 bin/config.guess                                   |   743 +-
 bin/config.sub                                     |   359 +-
 bin/depcomp                                        |   636 +-
 bin/distdep                                        |     0
 bin/genparser                                      |   252 +
 bin/h5vers                                         |    56 +-
 bin/install-sh                                     |   385 +-
 bin/ltmain.sh                                      |  5528 +++--
 bin/make_err                                       |    12 +
 bin/make_vers                                      |   111 +-
 bin/missing                                        |     2 +-
 bin/mkinstalldirs                                  |   101 -
 bin/release                                        |    25 +-
 bin/test-driver                                    |    15 +-
 bin/trace                                          |    10 +-
 c++/Makefile.in                                    |   117 +-
 c++/examples/Makefile.am                           |     4 +-
 c++/examples/Makefile.in                           |   125 +-
 c++/examples/run-c++-ex.sh.in                      |     2 +-
 c++/examples/testh5c++.sh.in                       |     3 +-
 c++/src/H5AbstractDs.cpp                           |     5 +-
 c++/src/H5AbstractDs.h                             |     2 +-
 c++/src/H5ArrayType.cpp                            |   166 +-
 c++/src/H5ArrayType.h                              |     6 +
 c++/src/H5Attribute.cpp                            |    31 +-
 c++/src/H5CommonFG.cpp                             |   102 +-
 c++/src/H5CompType.cpp                             |    11 +-
 c++/src/H5DataSet.cpp                              |    69 +-
 c++/src/H5DataSet.h                                |     4 +-
 c++/src/H5DataSpace.cpp                            |    21 +-
 c++/src/H5DataType.cpp                             |    54 +-
 c++/src/H5DataType.h                               |     4 +-
 c++/src/H5Exception.cpp                            |     8 +-
 c++/src/H5FaccProp.cpp                             |    45 +-
 c++/src/H5FcreatProp.cpp                           |     2 +
 c++/src/H5FcreatProp.h                             |     2 +
 c++/src/H5File.cpp                                 |    44 +-
 c++/src/H5Group.cpp                                |    16 +-
 c++/src/H5Group.h                                  |     5 +-
 c++/src/H5IdComponent.cpp                          |     4 -
 c++/src/H5IdComponent.h                            |     1 -
 c++/src/H5Library.cpp                              |     8 +-
 c++/src/H5Location.cpp                             |    37 +-
 c++/src/H5Location.h                               |    16 +-
 c++/src/H5Object.cpp                               |     2 +-
 c++/src/H5OcreatProp.cpp                           |     2 +
 c++/src/H5PropList.cpp                             |     5 +-
 c++/src/H5StrType.cpp                              |    21 +-
 c++/src/H5VarLenType.h                             |     3 -
 c++/src/Makefile.in                                |   153 +-
 c++/src/cpp_doc_config                             |     2 +-
 c++/test/CMakeLists.txt                            |     1 +
 c++/test/Makefile.am                               |     7 +-
 c++/test/Makefile.in                               |   138 +-
 c++/test/dsets.cpp                                 |    56 +-
 c++/test/h5cpputil.cpp                             |     2 +-
 c++/test/h5cpputil.h                               |     2 +
 c++/test/tarray.cpp                                |   394 +
 c++/test/tattr.cpp                                 |     4 +-
 c++/test/tcompound.cpp                             |    57 +-
 c++/test/testhdf5.cpp                              |     3 +-
 c++/test/tfile.cpp                                 |     4 +-
 c++/test/th5s.h5                                   |   Bin 2049 -> 2049 bytes
 c++/test/tlinks.cpp                                |     6 +-
 c++/test/trefer.cpp                                |    33 +-
 c++/test/ttypes.cpp                                |     6 +-
 config/cce-fflags                                  |    19 +-
 config/cce-flags                                   |    24 +-
 config/cmake/CMakeFindJavaCommon.cmake             |    41 +
 config/cmake/CTestCustom.cmake                     |    42 +-
 config/cmake/ConfigureChecks.cmake                 |    25 +-
 config/cmake/FindHDFJAVA.cmake.in                  |    68 +
 config/cmake/FindJNI.cmake                         |   342 +
 config/cmake/H5pubconf.h.in                        |    31 +-
 config/cmake/HDF518_Examples.cmake.in              |    13 +
 config/cmake/HDF5UseFortran.cmake                  |   498 +
 config/cmake/HDF5_Examples.cmake.in                |   187 +
 config/cmake/HDF5_Process_Flex_Files.cmake         |    84 +
 config/cmake/HDFCompilerFlags.cmake                |     4 +-
 config/cmake/README.txt.cmake.in                   |    13 +-
 config/cmake/UseJava.cmake                         |  1350 ++
 config/cmake/UseJavaClassFilelist.cmake            |    58 +
 config/cmake/UseJavaSymlinks.cmake                 |    38 +
 config/cmake/cacheinit.cmake                       |     6 +
 config/cmake/hdf5-config.cmake.in                  |    15 +-
 config/cmake/jrunTest.cmake                        |   222 +
 config/cmake/libhdf5.settings.cmake.in             |    58 +-
 config/cmake/mccacheinit.cmake                     |    10 +-
 config/cmake/scripts/CTestScript.cmake             |    56 +-
 config/cmake/scripts/HDF518config.cmake            |   261 -
 config/cmake/scripts/HDF5config.cmake              |   274 +
 config/cmake/vfdTest.cmake                         |     4 +-
 config/cmake_ext_mod/ConfigureChecks.cmake         |    35 +-
 config/cmake_ext_mod/prunTest.cmake                |     4 +-
 config/cmake_ext_mod/runTest.cmake                 |    40 +-
 config/commence.am                                 |     1 +
 config/conclude_fc.am                              |    33 +
 config/gnu-cxxflags                                |   830 +
 config/gnu-fflags                                  |    23 +-
 config/gnu-flags                                   |    47 +-
 config/i686-pc-cygwin                              |    22 +-
 config/ibm-aix                                     |    49 +-
 config/ibm-flags                                   |    29 +-
 config/intel-fflags                                |    17 +-
 config/intel-flags                                 |    25 +-
 config/linux-gnulibc1                              |    31 +-
 config/lt_vers.am                                  |    34 +-
 config/pgi-fflags                                  |    20 +-
 config/pgi-flags                                   |    42 +-
 config/solaris                                     |    91 +-
 config/x86_64-pc-cygwin                            |    23 +-
 configure                                          | 18871 +++++++++--------
 configure.ac                                       |  1917 +-
 debian/README.source                               |     5 +-
 debian/changelog                                   |    39 +
 debian/compat                                      |     2 +-
 debian/control                                     |    89 +-
 debian/control.in                                  |    71 +-
 debian/libhdf5-10.lintian-overrides                |     3 -
 debian/libhdf5-10.symbols                          |  4180 ----
 debian/libhdf5-100.lintian-overrides               |     1 +
 debian/libhdf5-100.symbols                         |  4849 +++++
 debian/libhdf5-cpp-100.lintian-overrides           |     1 +
 debian/libhdf5-cpp-100.symbols                     |  1267 ++
 debian/libhdf5-cpp-11.lintian-overrides            |     3 -
 debian/libhdf5-cpp-11.symbols                      |  1125 --
 debian/libhdf5-mpich-10.lintian-overrides          |     2 -
 debian/libhdf5-mpich-10.symbols                    |  4183 ----
 debian/libhdf5-mpich-100.lintian-overrides         |     1 +
 debian/libhdf5-mpich-100.symbols                   |  4870 +++++
 debian/libhdf5-openmpi-10.lintian-overrides        |     2 -
 debian/libhdf5-openmpi-10.symbols                  |  4183 ----
 debian/libhdf5-openmpi-100.lintian-overrides       |     2 +
 debian/libhdf5-openmpi-100.symbols                 |  4870 +++++
 debian/mangled-symbols-table                       |   246 +-
 debian/map_mpi.ver                                 |  2938 +--
 debian/map_serial.ver                              |  3190 +--
 debian/orig-tar.exclude                            |    15 +-
 debian/orig-tar.sh                                 |    13 +-
 debian/patches/flavor-configure-option.patch       |   108 +-
 ...-a-string-literal-and-no-format-arguments.patch |    26 -
 debian/patches/hurd-sigsetjmp.patch                |    18 -
 debian/patches/path_max.diff                       |     4 +-
 debian/patches/relax-version-check.patch           |     2 +-
 debian/patches/series                              |     2 -
 debian/patches/ullong_force.diff                   |     4 +-
 debian/process-symbols-files                       |     2 +-
 debian/rules                                       |   508 +-
 debian/update-symbols-files-soname                 |    15 +
 examples/CMakeLists.txt                            |     8 +
 examples/CMakeTests.cmake                          |    26 +
 examples/Makefile.am                               |    20 +-
 examples/Makefile.in                               |   141 +-
 examples/README                                    |     2 +-
 examples/h5_extend_write.c                         |     6 +-
 examples/h5_ref2reg.c                              |     4 +-
 examples/h5_reference.c                            |     2 +-
 examples/h5_vds-eiger.c                            |   177 +
 examples/h5_vds-exc.c                              |   226 +
 examples/h5_vds-exclim.c                           |   222 +
 examples/h5_vds-percival-unlim-maxmin.c            |   309 +
 examples/h5_vds-percival-unlim.c                   |   353 +
 examples/h5_vds-percival.c                         |   242 +
 examples/h5_vds-simpleIO.c                         |   184 +
 examples/h5_vds.c                                  |   267 +
 examples/run-c-ex.sh.in                            |    20 +-
 examples/testh5cc.sh.in                            |     3 +-
 fortran/Makefile.in                                |   117 +-
 fortran/examples/CMakeLists.txt                    |    54 +-
 fortran/examples/CMakeTests.cmake                  |     4 +
 fortran/examples/Makefile.am                       |    18 +-
 fortran/examples/Makefile.in                       |   166 +-
 fortran/examples/nested_derived_type.f90           |    12 +-
 fortran/examples/run-fortran-ex.sh.in              |     2 +-
 fortran/examples/rwdset_fortran2003.f90            |    24 +-
 fortran/robodoc.rc                                 |     5 +-
 fortran/src/CMakeLists.txt                         |   243 +-
 fortran/src/H5Af.c                                 |  1478 +-
 fortran/src/H5Aff.F90                              |  1873 ++
 fortran/src/H5Aff.f90                              |  1673 --
 fortran/src/H5Aff_F03.f90                          |  1267 --
 fortran/src/H5Aff_F90.f90                          |  1618 --
 fortran/src/H5Df.c                                 |  1658 +-
 fortran/src/H5Dff.F90                              |  1877 ++
 fortran/src/H5Dff.f90                              |  1035 -
 fortran/src/H5Dff_F03.f90                          |  2389 ---
 fortran/src/H5Dff_F90.f90                          |  3004 ---
 fortran/src/H5Ef.c                                 |    75 +-
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 fortran/src/H5FDmpiof.c                            |   258 -
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 fortran/src/H5Ff.c                                 |   238 +-
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 fortran/src/H5Fff.f90                              |   834 -
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 fortran/src/H5Gf.c                                 |   393 +-
 fortran/src/H5Gff.F90                              |  1272 ++
 fortran/src/H5Gff.f90                              |  1331 --
 fortran/src/H5If.c                                 |   104 +-
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 fortran/src/H5Lff.F90                              |  1478 ++
 fortran/src/H5Lff.f90                              |  1300 --
 fortran/src/H5Lff_F03.f90                          |   243 -
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 fortran/src/H5Of.c                                 |    94 +-
 fortran/src/H5Off.F90                              |  1149 ++
 fortran/src/H5Off.f90                              |   775 -
 fortran/src/H5Off_F03.f90                          |   435 -
 fortran/src/H5Off_F90.f90                          |    39 -
 fortran/src/H5Pf.c                                 |  2665 ++-
 fortran/src/H5Pff.F90                              |  8024 ++++++++
 fortran/src/H5Pff.f90                              |  6400 ------
 fortran/src/H5Pff_F03.f90                          |  1267 --
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 ...ranlib_test_1_8.f90 => fortranlib_test_1_8.F90} |     0
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 java/src/hdf/hdf5lib/CMakeLists.txt                |   127 +
 java/src/hdf/hdf5lib/H5.java                       |  9422 +++++++++
 java/src/hdf/hdf5lib/HDF5Constants.java            |  1883 ++
 java/src/hdf/hdf5lib/HDF5GroupInfo.java            |   171 +
 java/src/hdf/hdf5lib/HDFArray.java                 |  1096 +
 java/src/hdf/hdf5lib/HDFNativeData.java            |   481 +
 java/src/hdf/hdf5lib/callbacks/Callbacks.java      |    33 +
 java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java |    23 +
 java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java  |    22 +
 java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java  |    21 +
 java/src/hdf/hdf5lib/callbacks/H5D_append_t.java   |    22 +
 java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java |    21 +
 java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java  |    22 +
 java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java    |    23 +
 java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java     |    22 +
 java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java |    23 +
 java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java  |    22 +
 java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java |    23 +
 java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java  |    22 +
 .../hdf5lib/callbacks/H5P_cls_close_func_cb.java   |    21 +
 .../hdf5lib/callbacks/H5P_cls_close_func_t.java    |    22 +
 .../hdf5lib/callbacks/H5P_cls_copy_func_cb.java    |    21 +
 .../hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java |    22 +
 .../hdf5lib/callbacks/H5P_cls_create_func_cb.java  |    21 +
 .../hdf5lib/callbacks/H5P_cls_create_func_t.java   |    22 +
 java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java |    21 +
 java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java  |    22 +
 .../hdf5lib/callbacks/H5P_prp_close_func_cb.java   |    21 +
 .../hdf5lib/callbacks/H5P_prp_compare_func_cb.java |    21 +
 .../hdf5lib/callbacks/H5P_prp_copy_func_cb.java    |    21 +
 .../hdf5lib/callbacks/H5P_prp_create_func_cb.java  |    21 +
 .../hdf5lib/callbacks/H5P_prp_delete_func_cb.java  |    21 +
 .../hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java |    21 +
 .../hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java |    21 +
 .../hdf/hdf5lib/exceptions/HDF5AtomException.java  |    44 +
 .../hdf5lib/exceptions/HDF5AttributeException.java |    42 +
 .../hdf/hdf5lib/exceptions/HDF5BtreeException.java |    42 +
 .../exceptions/HDF5DataFiltersException.java       |    42 +
 .../exceptions/HDF5DataStorageException.java       |    43 +
 .../exceptions/HDF5DatasetInterfaceException.java  |    42 +
 .../HDF5DataspaceInterfaceException.java           |    43 +
 .../exceptions/HDF5DatatypeInterfaceException.java |    43 +
 java/src/hdf/hdf5lib/exceptions/HDF5Exception.java |    68 +
 .../exceptions/HDF5ExternalFileListException.java  |    43 +
 .../exceptions/HDF5FileInterfaceException.java     |    43 +
 .../exceptions/HDF5FunctionArgumentException.java  |    43 +
 .../exceptions/HDF5FunctionEntryExitException.java |    43 +
 .../hdf/hdf5lib/exceptions/HDF5HeapException.java  |    43 +
 .../exceptions/HDF5InternalErrorException.java     |    43 +
 .../hdf/hdf5lib/exceptions/HDF5JavaException.java  |    45 +
 .../hdf5lib/exceptions/HDF5LibraryException.java   |   383 +
 .../exceptions/HDF5LowLevelIOException.java        |    43 +
 .../exceptions/HDF5MetaDataCacheException.java     |    43 +
 .../exceptions/HDF5ObjectHeaderException.java      |    43 +
 .../HDF5PropertyListInterfaceException.java        |    43 +
 .../hdf5lib/exceptions/HDF5ReferenceException.java |    37 +
 .../HDF5ResourceUnavailableException.java          |    43 +
 .../exceptions/HDF5SymbolTableException.java       |    43 +
 .../hdf/hdf5lib/structs/H5AC_cache_config_t.java   |    99 +
 java/src/hdf/hdf5lib/structs/H5A_info_t.java       |    34 +
 java/src/hdf/hdf5lib/structs/H5E_error2_t.java     |    41 +
 java/src/hdf/hdf5lib/structs/H5F_info2_t.java      |    47 +
 java/src/hdf/hdf5lib/structs/H5G_info_t.java       |    27 +
 java/src/hdf/hdf5lib/structs/H5L_info_t.java       |    38 +
 java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java   |    49 +
 java/src/hdf/hdf5lib/structs/H5O_info_t.java       |    54 +
 java/src/hdf/hdf5lib/structs/H5_ih_info_t.java     |    31 +
 java/src/hdf/overview.html                         |    96 +
 java/src/jni/CMakeLists.txt                        |    85 +
 java/src/jni/Makefile.am                           |    44 +
 java/src/jni/Makefile.in                           |  1507 ++
 java/src/jni/exceptionImp.c                        |   414 +
 java/src/jni/exceptionImp.h                        |    67 +
 java/src/jni/h5Constants.c                         |   694 +
 java/src/jni/h5Imp.c                               |   181 +
 java/src/jni/h5Imp.h                               |    95 +
 java/src/jni/h5aImp.c                              |   879 +
 java/src/jni/h5aImp.h                              |   273 +
 java/src/jni/h5dImp.c                              |  1782 ++
 java/src/jni/h5dImp.h                              |   335 +
 java/src/jni/h5eImp.c                              |   524 +
 java/src/jni/h5eImp.h                              |   167 +
 java/src/jni/h5fImp.c                              |   589 +
 java/src/jni/h5fImp.h                              |   230 +
 java/src/jni/h5gImp.c                              |   281 +
 java/src/jni/h5gImp.h                              |   112 +
 java/src/jni/h5iImp.c                              |   289 +
 java/src/jni/h5iImp.h                              |   143 +
 java/src/jni/h5jni.h                               |   249 +
 java/src/jni/h5lImp.c                              |   736 +
 java/src/jni/h5lImp.h                              |   183 +
 java/src/jni/h5oImp.c                              |   790 +
 java/src/jni/h5oImp.h                              |   191 +
 java/src/jni/h5pImp.c                              |  5532 +++++
 java/src/jni/h5pImp.h                              |  1354 ++
 java/src/jni/h5plImp.c                             |    64 +
 java/src/jni/h5plImp.h                             |    46 +
 java/src/jni/h5rImp.c                              |   324 +
 java/src/jni/h5rImp.h                              |    78 +
 java/src/jni/h5sImp.c                              |  1408 ++
 java/src/jni/h5sImp.h                              |   288 +
 java/src/jni/h5tImp.c                              |  1612 ++
 java/src/jni/h5tImp.h                              |   566 +
 java/src/jni/h5util.c                              |  2592 +++
 java/src/jni/h5util.h                              |   108 +
 java/src/jni/h5zImp.c                              |    84 +
 java/src/jni/h5zImp.h                              |    55 +
 java/src/jni/nativeData.c                          |  1195 ++
 java/src/jni/nativeData.h                          |   115 +
 java/test/CMakeLists.txt                           |   132 +
 java/test/JUnit-interface.ert                      |     2 +
 java/test/JUnit-interface.txt                      |   661 +
 java/test/Makefile.am                              |   104 +
 java/test/Makefile.in                              |  1336 ++
 java/test/TestAll.java                             |    40 +
 java/test/TestH5.java                              |   257 +
 java/test/TestH5A.java                             |  1119 ++
 java/test/TestH5D.java                             |   944 +
 java/test/TestH5Dparams.java                       |   144 +
 java/test/TestH5Dplist.java                        |   216 +
 java/test/TestH5E.java                             |   553 +
 java/test/TestH5Edefault.java                      |   564 +
 java/test/TestH5Eregister.java                     |    78 +
 java/test/TestH5F.java                             |   332 +
 java/test/TestH5Fbasic.java                        |   320 +
 java/test/TestH5Fparams.java                       |   215 +
 java/test/TestH5Fswmr.java                         |   118 +
 java/test/TestH5G.java                             |   505 +
 java/test/TestH5Gbasic.java                        |   381 +
 java/test/TestH5Giterate.java                      |   136 +
 java/test/TestH5Lbasic.java                        |   371 +
 java/test/TestH5Lcreate.java                       |   819 +
 java/test/TestH5Lparams.java                       |   231 +
 java/test/TestH5Obasic.java                        |   488 +
 java/test/TestH5Ocopy.java                         |   365 +
 java/test/TestH5Ocreate.java                       |   562 +
 java/test/TestH5Oparams.java                       |   164 +
 java/test/TestH5P.java                             |  1222 ++
 java/test/TestH5PData.java                         |   170 +
 java/test/TestH5PL.java                            |    61 +
 java/test/TestH5Pfapl.java                         |  1381 ++
 java/test/TestH5Plist.java                         |  1013 +
 java/test/TestH5Pvirtual.java                      |   433 +
 java/test/TestH5R.java                             |   335 +
 java/test/TestH5S.java                             |   590 +
 java/test/TestH5Sbasic.java                        |   247 +
 java/test/TestH5T.java                             |   459 +
 java/test/TestH5Tbasic.java                        |   161 +
 java/test/TestH5Tparams.java                       |   399 +
 java/test/TestH5Z.java                             |   100 +
 java/test/h5ex_g_iterate.orig                      |   Bin 0 -> 2928 bytes
 java/test/junit.sh.in                              |   263 +
 m4/aclocal_fc.m4                                   |   356 +-
 m4/ax_check_class.m4                               |   144 +
 m4/ax_check_classpath.m4                           |    60 +
 m4/ax_check_java_home.m4                           |    80 +
 m4/ax_check_junit.m4                               |    70 +
 m4/ax_check_rqrd_class.m4                          |    62 +
 m4/ax_java_check_class.m4                          |    85 +
 m4/ax_java_options.m4                              |    48 +
 m4/ax_jni_include_dir.m4                           |   132 +
 m4/ax_prog_jar.m4                                  |    49 +
 m4/ax_prog_java.m4                                 |   115 +
 m4/ax_prog_java_cc.m4                              |   104 +
 m4/ax_prog_java_works.m4                           |   134 +
 m4/ax_prog_javac.m4                                |    79 +
 m4/ax_prog_javac_works.m4                          |    72 +
 m4/ax_prog_javadoc.m4                              |    50 +
 m4/ax_prog_javah.m4                                |    64 +
 m4/ax_try_compile_java.m4                          |    55 +
 m4/ax_try_run_java.m4                              |    56 +
 release_docs/HISTORY-1_0-1_8_0_rc3.txt             |     8 +-
 release_docs/HISTORY-1_8.txt                       | 10947 ----------
 release_docs/HISTORY-1_8_0-1_10_0.txt              |  1742 ++
 release_docs/INSTALL                               |   542 +-
 release_docs/INSTALL_CMake.txt                     |   137 +-
 release_docs/INSTALL_Cygwin.txt                    |    13 +-
 release_docs/INSTALL_Windows.txt                   |     6 +-
 release_docs/RELEASE.txt                           |   813 +-
 release_docs/USING_CMake_Examples.txt              |    12 +-
 release_docs/USING_HDF5_CMake.txt                  |   106 +-
 release_docs/USING_HDF5_VS.txt                     |    58 +-
 src/CMakeLists.txt                                 |   410 +-
 src/H5.c                                           |   219 +-
 src/H5A.c                                          |   317 +-
 src/H5AC.c                                         |  4636 ++---
 src/H5AClog.c                                      |   892 +
 src/H5ACmodule.h                                   |    35 +
 src/H5ACmpio.c                                     |  2253 +++
 src/H5ACpkg.h                                      |   158 +-
 src/H5ACprivate.h                                  |   340 +-
 src/H5ACpublic.h                                   |     9 +-
 src/H5Abtree2.c                                    |   167 +-
 src/H5Adense.c                                     |    28 +-
 src/H5Adeprec.c                                    |    64 +-
 src/H5Aint.c                                       |   426 +-
 src/H5Amodule.h                                    |    35 +
 src/H5Apkg.h                                       |    25 +-
 src/H5Atest.c                                      |     6 +-
 src/H5B.c                                          |   253 +-
 src/H5B2.c                                         |   457 +-
 src/H5B2cache.c                                    |  1382 +-
 src/H5B2dbg.c                                      |   157 +-
 src/H5B2hdr.c                                      |   210 +-
 src/H5B2int.c                                      |  2499 ++-
 src/H5B2module.h                                   |    36 +
 src/H5B2pkg.h                                      |   188 +-
 src/H5B2private.h                                  |    25 +-
 src/H5B2stat.c                                     |     4 +-
 src/H5B2test.c                                     |   317 +-
 src/H5Bcache.c                                     |   391 +-
 src/H5Bdbg.c                                       |    29 +-
 src/H5Bmodule.h                                    |    35 +
 src/H5Bpkg.h                                       |    10 +-
 src/H5Bprivate.h                                   |     5 +-
 src/H5C.c                                          |  8609 +++++---
 src/H5CS.c                                         |   167 +-
 src/H5CSprivate.h                                  |    22 +-
 src/H5Cmodule.h                                    |    35 +
 src/H5Cmpio.c                                      |  1504 ++
 src/H5Cpkg.h                                       |  7060 ++++---
 src/H5Cprivate.h                                   |  1952 +-
 src/H5D.c                                          |   317 +-
 src/H5Dbtree.c                                     |   387 +-
 src/H5Dbtree2.c                                    |  1559 ++
 src/H5Dchunk.c                                     |  2706 ++-
 src/H5Dcompact.c                                   |    59 +-
 src/H5Dcontig.c                                    |   163 +-
 src/H5Ddbg.c                                       |    27 +-
 src/H5Ddeprec.c                                    |   183 +-
 src/H5Dearray.c                                    |  1813 ++
 src/H5Defl.c                                       |   192 +-
 src/H5Dfarray.c                                    |  1706 ++
 src/H5Dfill.c                                      |     9 +-
 src/H5Dint.c                                       |  1547 +-
 src/H5Dio.c                                        |   166 +-
 src/H5Dlayout.c                                    |   453 +-
 src/H5Dmodule.h                                    |    35 +
 src/H5Dmpio.c                                      |    75 +-
 src/H5Dnone.c                                      |   497 +
 src/H5Doh.c                                        |    92 +-
 src/H5Dpkg.h                                       |   210 +-
 src/H5Dprivate.h                                   |    34 +-
 src/H5Dpublic.h                                    |    31 +-
 src/H5Dscatgath.c                                  |    10 +-
 src/H5Dselect.c                                    |     4 +-
 src/H5Dsingle.c                                    |   557 +
 src/H5Dtest.c                                      |    43 +-
 src/H5Dvirtual.c                                   |  2947 +++
 src/H5E.c                                          |   153 +-
 src/H5EA.c                                         |  1150 ++
 src/H5EAcache.c                                    |  2204 ++
 src/H5EAdbg.c                                      |   478 +
 src/H5EAdblkpage.c                                 |   322 +
 src/H5EAdblock.c                                   |   491 +
 src/H5EAhdr.c                                      |   810 +
 src/H5EAiblock.c                                   |   479 +
 src/H5EAint.c                                      |   141 +
 src/H5EAmodule.h                                   |    35 +
 src/H5EApkg.h                                      |   491 +
 src/H5EAprivate.h                                  |   159 +
 src/H5EAsblock.c                                   |   446 +
 src/H5EAstat.c                                     |   116 +
 src/H5EAtest.c                                     |   487 +
 src/H5Edefin.h                                     |    32 +-
 src/H5Edeprec.c                                    |    50 +-
 src/H5Einit.h                                      |   148 +-
 src/H5Eint.c                                       |    35 +-
 src/H5Emodule.h                                    |    36 +
 src/H5Epkg.h                                       |     2 +-
 src/H5Eprivate.h                                   |    83 +-
 src/H5Epubgen.h                                    |    72 +-
 src/H5Eterm.h                                      |    36 +-
 src/H5F.c                                          |   733 +-
 src/H5FA.c                                         |   885 +
 src/H5FAcache.c                                    |  1271 ++
 src/H5FAdbg.c                                      |   285 +
 src/H5FAdblkpage.c                                 |   315 +
 src/H5FAdblock.c                                   |   443 +
 src/H5FAhdr.c                                      |   565 +
 src/H5FAint.c                                      |   139 +
 src/H5FAmodule.h                                   |    35 +
 src/H5FApkg.h                                      |   331 +
 src/H5FAprivate.h                                  |   144 +
 src/H5FAstat.c                                     |   113 +
 src/H5FAtest.c                                     |   422 +
 src/H5FD.c                                         |   524 +-
 src/H5FDcore.c                                     |   381 +-
 src/H5FDcore.h                                     |     6 +-
 src/H5FDdirect.c                                   |   169 +-
 src/H5FDdirect.h                                   |     4 +-
 src/H5FDdrvr_module.h                              |    35 +
 src/H5FDfamily.c                                   |   228 +-
 src/H5FDfamily.h                                   |     4 +-
 src/H5FDint.c                                      |    91 +-
 src/H5FDlog.c                                      |   146 +-
 src/H5FDlog.h                                      |     3 -
 src/H5FDmodule.h                                   |    35 +
 src/H5FDmpi.c                                      |    13 +-
 src/H5FDmpio.c                                     |  1158 +-
 src/H5FDmpio.h                                     |     2 +-
 src/H5FDmulti.c                                    |   296 +-
 src/H5FDmulti.h                                    |     6 +-
 src/H5FDpkg.h                                      |     7 +-
 src/H5FDprivate.h                                  |    35 +-
 src/H5FDpublic.h                                   |    77 +-
 src/H5FDsec2.c                                     |   114 +-
 src/H5FDsec2.h                                     |     3 -
 src/H5FDspace.c                                    |    33 +-
 src/H5FDstdio.c                                    |   179 +-
 src/H5FDstdio.h                                    |     1 -
 src/H5FDtest.c                                     |   119 +
 src/H5FDwindows.h                                  |    20 +-
 src/H5FL.c                                         |   690 +-
 src/H5FLmodule.h                                   |    35 +
 src/H5FLprivate.h                                  |     2 +-
 src/H5FO.c                                         |     2 +-
 src/H5FS.c                                         |   637 +-
 src/H5FScache.c                                    |  1564 +-
 src/H5FSdbg.c                                      |   127 +-
 src/H5FSint.c                                      |   145 +
 src/H5FSmodule.h                                   |    35 +
 src/H5FSpkg.h                                      |    41 +-
 src/H5FSprivate.h                                  |    34 +-
 src/H5FSpublic.h                                   |     2 +-
 src/H5FSsection.c                                  |   461 +-
 src/H5FSstat.c                                     |    16 +-
 src/H5FStest.c                                     |    31 +-
 src/H5Faccum.c                                     |    64 +-
 src/H5Fcwfs.c                                      |    14 +-
 src/H5Fdbg.c                                       |     6 +-
 src/H5Fdeprec.c                                    |   149 +
 src/H5Fefc.c                                       |    13 +-
 src/H5Ffake.c                                      |    29 +-
 src/H5Fint.c                                       |   600 +-
 src/H5Fio.c                                        |   273 +-
 src/H5Fmodule.h                                    |    35 +
 src/H5Fmount.c                                     |    33 +-
 src/H5Fmpi.c                                       |   100 +-
 src/H5Fpkg.h                                       |   171 +-
 src/H5Fprivate.h                                   |   198 +-
 src/H5Fpublic.h                                    |   129 +-
 src/H5Fquery.c                                     |    87 +-
 src/H5Fsfile.c                                     |     2 +-
 src/H5Fsuper.c                                     |   773 +-
 src/H5Fsuper_cache.c                               |  1532 +-
 src/H5Ftest.c                                      |    10 +-
 src/H5G.c                                          |   351 +-
 src/H5Gbtree2.c                                    |    81 +-
 src/H5Gcache.c                                     |   419 +-
 src/H5Gcompact.c                                   |    12 +-
 src/H5Gdense.c                                     |    20 +-
 src/H5Gdeprec.c                                    |    94 +-
 src/H5Gent.c                                       |    14 +-
 src/H5Gint.c                                       |   152 +-
 src/H5Glink.c                                      |     6 +-
 src/H5Gloc.c                                       |    16 +-
 src/H5Gmodule.h                                    |    35 +
 src/H5Gname.c                                      |    13 +-
 src/H5Gnode.c                                      |    47 +-
 src/H5Gobj.c                                       |    52 +-
 src/H5Goh.c                                        |    38 +-
 src/H5Gpkg.h                                       |     7 +-
 src/H5Gprivate.h                                   |    22 +-
 src/H5Gpublic.h                                    |     2 +
 src/H5Groot.c                                      |     4 +-
 src/H5Gstab.c                                      |    70 +-
 src/H5Gtest.c                                      |    57 +-
 src/H5Gtraverse.c                                  |    25 +-
 src/H5HF.c                                         |   180 +-
 src/H5HFbtree2.c                                   |   494 +-
 src/H5HFcache.c                                    |  3560 +++-
 src/H5HFdbg.c                                      |    91 +-
 src/H5HFdblock.c                                   |    40 +-
 src/H5HFdtable.c                                   |     9 +-
 src/H5HFhdr.c                                      |    41 +-
 src/H5HFhuge.c                                     |   153 +-
 src/H5HFiblock.c                                   |    89 +-
 src/H5HFint.c                                      |   146 +
 src/H5HFiter.c                                     |     5 +-
 src/H5HFman.c                                      |    98 +-
 src/H5HFmodule.h                                   |    35 +
 src/H5HFpkg.h                                      |   153 +-
 src/H5HFprivate.h                                  |     6 +
 src/H5HFsection.c                                  |    96 +-
 src/H5HFspace.c                                    |    11 +-
 src/H5HFstat.c                                     |     3 +-
 src/H5HFtest.c                                     |    19 +-
 src/H5HFtiny.c                                     |   177 +-
 src/H5HG.c                                         |   134 +-
 src/H5HGcache.c                                    |   543 +-
 src/H5HGdbg.c                                      |     4 +-
 src/H5HGmodule.h                                   |    35 +
 src/H5HGpkg.h                                      |    10 +-
 src/H5HGprivate.h                                  |     7 +-
 src/H5HGquery.c                                    |     2 +-
 src/H5HL.c                                         |   916 +-
 src/H5HLcache.c                                    |   972 +-
 src/H5HLdbg.c                                      |    77 +-
 src/H5HLdblk.c                                     |   282 +
 src/H5HLint.c                                      |   323 +-
 src/H5HLmodule.h                                   |    35 +
 src/H5HLpkg.h                                      |   104 +-
 src/H5HLprfx.c                                     |   166 +
 src/H5HLprivate.h                                  |    45 +-
 src/H5HLpublic.h                                   |     2 -
 src/H5I.c                                          |   432 +-
 src/H5Imodule.h                                    |    35 +
 src/H5Ipkg.h                                       |     2 +-
 src/H5Iprivate.h                                   |     4 +-
 src/H5Ipublic.h                                    |     4 +-
 src/H5Itest.c                                      |     6 +-
 src/H5L.c                                          |   415 +-
 src/H5Lexternal.c                                  |   132 +-
 src/H5Lmodule.h                                    |    36 +
 src/H5Lpkg.h                                       |     2 +-
 src/H5Lprivate.h                                   |     2 +
 src/H5MF.c                                         |   533 +-
 src/H5MFaggr.c                                     |    18 +-
 src/H5MFdbg.c                                      |    70 +-
 src/H5MFmodule.h                                   |    35 +
 src/H5MFpkg.h                                      |     2 +-
 src/H5MFprivate.h                                  |    16 +-
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 create mode 100644 tools/testfiles/vds/tvds-2.ls
 create mode 100644 tools/testfiles/vds/tvds-3_1.ddl
 create mode 100644 tools/testfiles/vds/tvds-3_1.ls
 create mode 100644 tools/testfiles/vds/tvds-3_2.ddl
 create mode 100644 tools/testfiles/vds/tvds-3_2.ls
 create mode 100644 tools/testfiles/vds/tvds-4.ddl
 create mode 100644 tools/testfiles/vds/tvds-4.ls
 create mode 100644 tools/testfiles/vds/tvds-5.ddl
 create mode 100644 tools/testfiles/vds/tvds-5.ls
 create mode 100644 tools/testfiles/vds/tvds_layout-1.ddl
 create mode 100644 tools/testfiles/vds/tvds_layout-2.ddl
 create mode 100644 tools/testfiles/vds/tvds_layout-3_1.ddl
 create mode 100644 tools/testfiles/vds/tvds_layout-3_2.ddl
 create mode 100644 tools/testfiles/vds/tvds_layout-4.ddl
 create mode 100644 tools/testfiles/vds/tvds_layout-5.ddl
 create mode 100644 tools/testfiles/vds/vds-eiger.h5
 create mode 100644 tools/testfiles/vds/vds-first.ddl
 create mode 100644 tools/testfiles/vds/vds-gap1.ddl
 create mode 100644 tools/testfiles/vds/vds-gap2.ddl
 create mode 100644 tools/testfiles/vds/vds-percival-unlim-maxmin.h5
 create mode 100644 tools/testfiles/vds/vds_layout-eiger.ddl
 create mode 100644 tools/testfiles/vds/vds_layout-maxmin.ddl

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/pkg-grass/hdf5.git



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