[hdf5] 01/01: Merge tag 'debian/1.10.0-patch1+docs-1_exp4'
Gilles Filippini
pini at debian.org
Sat Nov 26 22:26:56 UTC 2016
This is an automated email from the git hooks/post-receive script.
pini pushed a commit to branch master
in repository hdf5.
commit 5eb9ff6700eece0892d3ad335a9ee31cb58959f4
Merge: 39f9405 9edc7e6
Author: Gilles Filippini <pini at debian.org>
Date: Sat Nov 5 23:25:48 2016 +0100
Merge tag 'debian/1.10.0-patch1+docs-1_exp4'
Prepare upload to unstable for hdf5 1.10 transition.
ACKNOWLEDGMENTS | 14 +-
CMakeInstallation.cmake | 36 +-
CMakeLists.txt | 370 +-
COPYING | 8 +-
CTestConfig.cmake | 10 +-
MANIFEST | 1154 +-
Makefile.am | 11 +-
Makefile.in | 154 +-
README.txt | 2 +-
aclocal.m4 | 8672 +-------
acsite.m4 | 84 -
autogen.sh | 302 +
bin/chkmanifest | 16 +
bin/cmakehdf5 | 388 +-
bin/compile | 370 +-
bin/config.guess | 743 +-
bin/config.sub | 359 +-
bin/depcomp | 636 +-
bin/distdep | 0
bin/genparser | 252 +
bin/h5vers | 56 +-
bin/install-sh | 385 +-
bin/ltmain.sh | 5528 +++--
bin/make_err | 12 +
bin/make_vers | 111 +-
bin/missing | 2 +-
bin/mkinstalldirs | 101 -
bin/release | 25 +-
bin/test-driver | 15 +-
bin/trace | 10 +-
c++/Makefile.in | 117 +-
c++/examples/Makefile.am | 4 +-
c++/examples/Makefile.in | 125 +-
c++/examples/run-c++-ex.sh.in | 2 +-
c++/examples/testh5c++.sh.in | 3 +-
c++/src/H5AbstractDs.cpp | 5 +-
c++/src/H5AbstractDs.h | 2 +-
c++/src/H5ArrayType.cpp | 166 +-
c++/src/H5ArrayType.h | 6 +
c++/src/H5Attribute.cpp | 31 +-
c++/src/H5CommonFG.cpp | 102 +-
c++/src/H5CompType.cpp | 11 +-
c++/src/H5DataSet.cpp | 69 +-
c++/src/H5DataSet.h | 4 +-
c++/src/H5DataSpace.cpp | 21 +-
c++/src/H5DataType.cpp | 54 +-
c++/src/H5DataType.h | 4 +-
c++/src/H5Exception.cpp | 8 +-
c++/src/H5FaccProp.cpp | 45 +-
c++/src/H5FcreatProp.cpp | 2 +
c++/src/H5FcreatProp.h | 2 +
c++/src/H5File.cpp | 44 +-
c++/src/H5Group.cpp | 16 +-
c++/src/H5Group.h | 5 +-
c++/src/H5IdComponent.cpp | 4 -
c++/src/H5IdComponent.h | 1 -
c++/src/H5Library.cpp | 8 +-
c++/src/H5Location.cpp | 37 +-
c++/src/H5Location.h | 16 +-
c++/src/H5Object.cpp | 2 +-
c++/src/H5OcreatProp.cpp | 2 +
c++/src/H5PropList.cpp | 5 +-
c++/src/H5StrType.cpp | 21 +-
c++/src/H5VarLenType.h | 3 -
c++/src/Makefile.in | 153 +-
c++/src/cpp_doc_config | 2 +-
c++/test/CMakeLists.txt | 1 +
c++/test/Makefile.am | 7 +-
c++/test/Makefile.in | 138 +-
c++/test/dsets.cpp | 56 +-
c++/test/h5cpputil.cpp | 2 +-
c++/test/h5cpputil.h | 2 +
c++/test/tarray.cpp | 394 +
c++/test/tattr.cpp | 4 +-
c++/test/tcompound.cpp | 57 +-
c++/test/testhdf5.cpp | 3 +-
c++/test/tfile.cpp | 4 +-
c++/test/th5s.h5 | Bin 2049 -> 2049 bytes
c++/test/tlinks.cpp | 6 +-
c++/test/trefer.cpp | 33 +-
c++/test/ttypes.cpp | 6 +-
config/cce-fflags | 19 +-
config/cce-flags | 24 +-
config/cmake/CMakeFindJavaCommon.cmake | 41 +
config/cmake/CTestCustom.cmake | 42 +-
config/cmake/ConfigureChecks.cmake | 25 +-
config/cmake/FindHDFJAVA.cmake.in | 68 +
config/cmake/FindJNI.cmake | 342 +
config/cmake/H5pubconf.h.in | 31 +-
config/cmake/HDF518_Examples.cmake.in | 13 +
config/cmake/HDF5UseFortran.cmake | 498 +
config/cmake/HDF5_Examples.cmake.in | 187 +
config/cmake/HDF5_Process_Flex_Files.cmake | 84 +
config/cmake/HDFCompilerFlags.cmake | 4 +-
config/cmake/README.txt.cmake.in | 13 +-
config/cmake/UseJava.cmake | 1350 ++
config/cmake/UseJavaClassFilelist.cmake | 58 +
config/cmake/UseJavaSymlinks.cmake | 38 +
config/cmake/cacheinit.cmake | 6 +
config/cmake/hdf5-config.cmake.in | 15 +-
config/cmake/jrunTest.cmake | 222 +
config/cmake/libhdf5.settings.cmake.in | 58 +-
config/cmake/mccacheinit.cmake | 10 +-
config/cmake/scripts/CTestScript.cmake | 56 +-
config/cmake/scripts/HDF518config.cmake | 261 -
config/cmake/scripts/HDF5config.cmake | 274 +
config/cmake/vfdTest.cmake | 4 +-
config/cmake_ext_mod/ConfigureChecks.cmake | 35 +-
config/cmake_ext_mod/prunTest.cmake | 4 +-
config/cmake_ext_mod/runTest.cmake | 40 +-
config/commence.am | 1 +
config/conclude_fc.am | 33 +
config/gnu-cxxflags | 830 +
config/gnu-fflags | 23 +-
config/gnu-flags | 47 +-
config/i686-pc-cygwin | 22 +-
config/ibm-aix | 49 +-
config/ibm-flags | 29 +-
config/intel-fflags | 17 +-
config/intel-flags | 25 +-
config/linux-gnulibc1 | 31 +-
config/lt_vers.am | 34 +-
config/pgi-fflags | 20 +-
config/pgi-flags | 42 +-
config/solaris | 91 +-
config/x86_64-pc-cygwin | 23 +-
configure | 18871 +++++++++--------
configure.ac | 1917 +-
debian/README.source | 5 +-
debian/changelog | 39 +
debian/compat | 2 +-
debian/control | 89 +-
debian/control.in | 71 +-
debian/libhdf5-10.lintian-overrides | 3 -
debian/libhdf5-10.symbols | 4180 ----
debian/libhdf5-100.lintian-overrides | 1 +
debian/libhdf5-100.symbols | 4849 +++++
debian/libhdf5-cpp-100.lintian-overrides | 1 +
debian/libhdf5-cpp-100.symbols | 1267 ++
debian/libhdf5-cpp-11.lintian-overrides | 3 -
debian/libhdf5-cpp-11.symbols | 1125 --
debian/libhdf5-mpich-10.lintian-overrides | 2 -
debian/libhdf5-mpich-10.symbols | 4183 ----
debian/libhdf5-mpich-100.lintian-overrides | 1 +
debian/libhdf5-mpich-100.symbols | 4870 +++++
debian/libhdf5-openmpi-10.lintian-overrides | 2 -
debian/libhdf5-openmpi-10.symbols | 4183 ----
debian/libhdf5-openmpi-100.lintian-overrides | 2 +
debian/libhdf5-openmpi-100.symbols | 4870 +++++
debian/mangled-symbols-table | 246 +-
debian/map_mpi.ver | 2938 +--
debian/map_serial.ver | 3190 +--
debian/orig-tar.exclude | 15 +-
debian/orig-tar.sh | 13 +-
debian/patches/flavor-configure-option.patch | 108 +-
...-a-string-literal-and-no-format-arguments.patch | 26 -
debian/patches/hurd-sigsetjmp.patch | 18 -
debian/patches/path_max.diff | 4 +-
debian/patches/relax-version-check.patch | 2 +-
debian/patches/series | 2 -
debian/patches/ullong_force.diff | 4 +-
debian/process-symbols-files | 2 +-
debian/rules | 508 +-
debian/update-symbols-files-soname | 15 +
examples/CMakeLists.txt | 8 +
examples/CMakeTests.cmake | 26 +
examples/Makefile.am | 20 +-
examples/Makefile.in | 141 +-
examples/README | 2 +-
examples/h5_extend_write.c | 6 +-
examples/h5_ref2reg.c | 4 +-
examples/h5_reference.c | 2 +-
examples/h5_vds-eiger.c | 177 +
examples/h5_vds-exc.c | 226 +
examples/h5_vds-exclim.c | 222 +
examples/h5_vds-percival-unlim-maxmin.c | 309 +
examples/h5_vds-percival-unlim.c | 353 +
examples/h5_vds-percival.c | 242 +
examples/h5_vds-simpleIO.c | 184 +
examples/h5_vds.c | 267 +
examples/run-c-ex.sh.in | 20 +-
examples/testh5cc.sh.in | 3 +-
fortran/Makefile.in | 117 +-
fortran/examples/CMakeLists.txt | 54 +-
fortran/examples/CMakeTests.cmake | 4 +
fortran/examples/Makefile.am | 18 +-
fortran/examples/Makefile.in | 166 +-
fortran/examples/nested_derived_type.f90 | 12 +-
fortran/examples/run-fortran-ex.sh.in | 2 +-
fortran/examples/rwdset_fortran2003.f90 | 24 +-
fortran/robodoc.rc | 5 +-
fortran/src/CMakeLists.txt | 243 +-
fortran/src/H5Af.c | 1478 +-
fortran/src/H5Aff.F90 | 1873 ++
fortran/src/H5Aff.f90 | 1673 --
fortran/src/H5Aff_F03.f90 | 1267 --
fortran/src/H5Aff_F90.f90 | 1618 --
fortran/src/H5Df.c | 1658 +-
fortran/src/H5Dff.F90 | 1877 ++
fortran/src/H5Dff.f90 | 1035 -
fortran/src/H5Dff_F03.f90 | 2389 ---
fortran/src/H5Dff_F90.f90 | 3004 ---
fortran/src/H5Ef.c | 75 +-
fortran/src/H5Eff.F90 | 302 +
fortran/src/H5Eff.f90 | 251 -
fortran/src/H5Eff_F03.f90 | 108 -
fortran/src/H5Eff_F90.f90 | 89 -
fortran/src/H5FDmpiof.c | 258 -
fortran/src/H5FDmpioff.f90 | 212 -
fortran/src/H5Ff.c | 238 +-
fortran/src/H5Fff.F90 | 871 +
fortran/src/H5Fff.f90 | 834 -
fortran/src/H5Fff_F03.f90 | 99 -
fortran/src/H5Fff_F90.f90 | 43 -
fortran/src/H5Gf.c | 393 +-
fortran/src/H5Gff.F90 | 1272 ++
fortran/src/H5Gff.f90 | 1331 --
fortran/src/H5If.c | 104 +-
fortran/src/H5Iff.F90 | 345 +
fortran/src/H5Iff.f90 | 352 -
fortran/src/H5Lf.c | 324 +-
fortran/src/H5Lff.F90 | 1478 ++
fortran/src/H5Lff.f90 | 1300 --
fortran/src/H5Lff_F03.f90 | 243 -
fortran/src/H5Lff_F90.f90 | 39 -
fortran/src/H5Of.c | 94 +-
fortran/src/H5Off.F90 | 1149 ++
fortran/src/H5Off.f90 | 775 -
fortran/src/H5Off_F03.f90 | 435 -
fortran/src/H5Off_F90.f90 | 39 -
fortran/src/H5Pf.c | 2665 ++-
fortran/src/H5Pff.F90 | 8024 ++++++++
fortran/src/H5Pff.f90 | 6400 ------
fortran/src/H5Pff_F03.f90 | 1267 --
fortran/src/H5Pff_F90.f90 | 949 -
fortran/src/H5Rf.c | 340 +-
fortran/src/H5Rff.F90 | 792 +
fortran/src/H5Rff.f90 | 128 -
fortran/src/H5Rff_F03.f90 | 719 -
fortran/src/H5Rff_F90.f90 | 514 -
fortran/src/H5Sf.c | 554 +-
fortran/src/H5Sff.F90 | 1868 ++
fortran/src/H5Sff.f90 | 1875 --
fortran/src/H5Tf.c | 684 +-
fortran/src/H5Tff.F90 | 3082 +++
fortran/src/H5Tff.f90 | 3105 ---
fortran/src/H5Tff_F03.f90 | 224 -
fortran/src/H5Tff_F90.f90 | 96 -
fortran/src/H5Zf.c | 44 +-
fortran/src/H5Zff.F90 | 189 +
fortran/src/H5Zff.f90 | 198 -
fortran/src/H5_DBLE_InterfaceExclude.f90 | 39 -
fortran/src/H5_DBLE_InterfaceInclude.f90 | 1859 --
fortran/src/H5_buildiface.F90 | 981 +
fortran/src/H5_f.c | 301 +-
fortran/src/H5_ff.F90 | 462 +
fortran/src/H5_ff.f90 | 409 -
fortran/src/H5_ff_F03.f90 | 75 -
fortran/src/H5_ff_F90.f90 | 34 -
fortran/src/H5config_f.inc.cmake | 87 +
fortran/src/H5config_f.inc.in | 62 +
fortran/src/H5f90.h | 2 +-
fortran/src/H5f90global.F90 | 1066 +
fortran/src/H5f90global.f90 | 946 -
fortran/src/H5f90kit.c | 32 +-
fortran/src/H5f90proto.h | 1479 +-
fortran/src/H5fort_type_defines.h.in | 16 +
fortran/src/H5fortkit.F90 | 66 +
fortran/src/H5match_types.c | 567 +-
fortran/src/H5test_kind.f90 | 269 -
fortran/src/H5test_kind_SIZEOF.f90 | 228 -
fortran/src/H5test_kind_STORAGE_SIZE.f90 | 230 -
fortran/src/HDF5.F90 | 46 +
fortran/src/HDF5.f90 | 56 -
fortran/src/HDF5mpio.f90 | 55 -
fortran/src/Makefile.am | 164 +-
fortran/src/Makefile.in | 450 +-
fortran/src/hdf5_fortrandll.def.in | 291 +-
fortran/test/CMakeLists.txt | 279 +-
fortran/test/CMakeTests.cmake | 93 +-
fortran/test/H5_test_buildiface.F90 | 275 +
fortran/test/Makefile.am | 78 +-
fortran/test/Makefile.in | 467 +-
fortran/test/{fflush1.f90 => fflush1.F90} | 0
fortran/test/fflush2.F90 | 177 +
fortran/test/fflush2.f90 | 178 -
fortran/test/fortranlib_test.F90 | 257 +
fortran/test/fortranlib_test.f90 | 249 -
...ranlib_test_1_8.f90 => fortranlib_test_1_8.F90} | 0
fortran/test/fortranlib_test_F03.F90 | 201 +
fortran/test/fortranlib_test_F03.f90 | 188 -
fortran/test/tH5A.F90 | 624 +
fortran/test/tH5A.f90 | 629 -
fortran/test/tH5A_1_8.F90 | 2779 +++
fortran/test/tH5A_1_8.f90 | 2816 ---
fortran/test/tH5D.F90 | 629 +
fortran/test/tH5D.f90 | 538 -
fortran/test/{tH5E.f90 => tH5E.F90} | 0
fortran/test/tH5E_F03.F90 | 203 +
fortran/test/tH5E_F03.f90 | 206 -
fortran/test/tH5F.F90 | 775 +
fortran/test/tH5F.f90 | 782 -
fortran/test/tH5F_F03.F90 | 179 +
fortran/test/tH5F_F03.f90 | 178 -
fortran/test/{tH5G.f90 => tH5G.F90} | 0
fortran/test/tH5G_1_8.F90 | 2126 ++
fortran/test/tH5G_1_8.f90 | 2159 --
fortran/test/tH5I.F90 | 321 +
fortran/test/tH5I.f90 | 319 -
fortran/test/tH5L_F03.F90 | 318 +
fortran/test/tH5L_F03.f90 | 321 -
fortran/test/tH5MISC_1_8.F90 | 469 +
fortran/test/tH5MISC_1_8.f90 | 474 -
fortran/test/tH5O.F90 | 793 +
fortran/test/tH5O.f90 | 797 -
fortran/test/tH5O_F03.F90 | 555 +
fortran/test/tH5O_F03.f90 | 555 -
fortran/test/tH5P.F90 | 677 +
fortran/test/tH5P.f90 | 696 -
fortran/test/tH5P_F03.F90 | 1088 +
fortran/test/tH5P_F03.f90 | 632 -
fortran/test/tH5R.F90 | 483 +
fortran/test/tH5R.f90 | 486 -
fortran/test/tH5S.F90 | 298 +
fortran/test/tH5S.f90 | 296 -
fortran/test/tH5Sselect.F90 | 1993 ++
fortran/test/tH5Sselect.f90 | 2000 --
fortran/test/tH5T.F90 | 1149 ++
fortran/test/tH5T.f90 | 1160 --
fortran/test/tH5T_F03.F90 | 3425 ++++
fortran/test/tH5T_F03.f90 | 3453 ----
fortran/test/tH5VL.F90 | 512 +
fortran/test/tH5VL.f90 | 518 -
fortran/test/{tH5Z.f90 => tH5Z.F90} | 0
fortran/test/tHDF5.F90 | 46 +
fortran/test/tHDF5.f90 | 45 -
fortran/test/tHDF5_1_8.F90 | 37 +
fortran/test/tHDF5_1_8.f90 | 37 -
fortran/test/tHDF5_F03.F90 | 39 +
fortran/test/tHDF5_F03.f90 | 39 -
fortran/test/tf.F90 | 412 +
fortran/test/tf.f90 | 393 -
fortran/test/tf_F03.f90 | 128 -
fortran/test/tf_F08.f90 | 128 -
fortran/test/tf_F90.f90 | 33 -
fortran/testpar/Makefile.am | 2 +-
fortran/testpar/Makefile.in | 139 +-
fortran/testpar/hyper.f90 | 143 +-
fortran/testpar/ptest.f90 | 119 +-
hl/Makefile.in | 117 +-
hl/c++/Makefile.in | 117 +-
hl/c++/examples/Makefile.am | 4 +-
hl/c++/examples/Makefile.in | 123 +-
hl/c++/examples/run-hlc++-ex.sh.in | 2 +-
hl/c++/src/CMakeLists.txt | 4 +-
hl/c++/src/H5PacketTable.cpp | 206 +-
hl/c++/src/H5PacketTable.h | 133 +-
hl/c++/src/Makefile.in | 152 +-
hl/c++/test/Makefile.in | 119 +-
hl/c++/test/ptableTest.cpp | 53 +-
hl/examples/Makefile.am | 4 +-
hl/examples/Makefile.in | 123 +-
hl/examples/run-hlc-ex.sh.in | 2 +-
hl/fortran/Makefile.in | 117 +-
hl/fortran/examples/CMakeTests.cmake | 11 +
hl/fortran/examples/Makefile.am | 6 +-
hl/fortran/examples/Makefile.in | 141 +-
hl/fortran/examples/run-hlfortran-ex.sh.in | 2 +-
hl/fortran/src/CMakeLists.txt | 73 +-
hl/fortran/src/H5DSfc.c | 36 +-
hl/fortran/src/H5DSff.F90 | 518 +
hl/fortran/src/H5DSff.f90 | 545 -
hl/fortran/src/H5HL_buildiface.F90 | 839 +
hl/fortran/src/H5IMcc.c | 4 +-
hl/fortran/src/H5IMfc.c | 54 +-
hl/fortran/src/H5IMff.F90 | 667 +
hl/fortran/src/H5IMff.f90 | 783 -
hl/fortran/src/H5LTf90proto.h | 1382 +-
hl/fortran/src/H5LTfc.c | 1474 +-
hl/fortran/src/H5LTff.F90 | 1878 ++
hl/fortran/src/H5LTff.f90 | 6490 ------
hl/fortran/src/H5TBfc.c | 307 +-
hl/fortran/src/H5TBff.F90 | 848 +
hl/fortran/src/H5TBff.f90 | 1900 --
hl/fortran/src/Makefile.am | 40 +-
hl/fortran/src/Makefile.in | 277 +-
hl/fortran/src/hdf5_hl_fortrandll.def.in | 88 +
hl/fortran/test/CMakeLists.txt | 16 +-
hl/fortran/test/Makefile.am | 10 +-
hl/fortran/test/Makefile.in | 166 +-
hl/fortran/test/{tstds.f90 => tstds.F90} | 0
hl/fortran/test/{tstimage.f90 => tstimage.F90} | 0
hl/fortran/test/tstlite.F90 | 1922 ++
hl/fortran/test/tstlite.f90 | 1628 --
hl/fortran/test/tsttable.F90 | 534 +
hl/fortran/test/tsttable.f90 | 466 -
hl/src/CMakeLists.txt | 4 +-
hl/src/H5DO.c | 192 +
hl/src/H5DOpublic.h | 13 +-
hl/src/H5DS.c | 14 +-
hl/src/H5IM.c | 26 +-
hl/src/H5LD.c | 639 +
hl/src/H5LDprivate.h | 49 +
hl/src/H5LDpublic.h | 33 +
hl/src/H5LT.c | 21 +-
hl/src/H5LTanalyze.c | 191 +-
hl/src/H5LTanalyze.l | 11 +
hl/src/H5LTparse.c | 1312 +-
hl/src/H5LTparse.h | 171 +-
hl/src/H5LTparse.y | 19 +-
hl/src/H5PT.c | 528 +-
hl/src/H5PTpublic.h | 68 +-
hl/src/H5TB.c | 2 +-
hl/src/Makefile.am | 6 +-
hl/src/Makefile.in | 161 +-
hl/src/hdf5_hl.h | 3 +-
hl/test/CMakeLists.txt | 37 +-
hl/test/CMakeTests.cmake | 24 +-
hl/test/Makefile.am | 11 +-
hl/test/Makefile.in | 195 +-
hl/test/dectris_hl_perf.c | 69 +-
hl/test/gen_test_ld.c | 379 +
hl/test/h5hltest.h | 2 +
hl/test/test_ds.c | 28 +-
hl/test/test_dset_append.c | 1196 ++
hl/test/test_dset_opt.c | 2 +-
hl/test/test_file_image.c | 44 +-
hl/test/test_image.c | 31 +-
hl/test/test_ld.c | 1430 ++
hl/test/test_ld.h5 | Bin 0 -> 42931 bytes
hl/test/test_lite.c | 31 +-
hl/test/test_packet.c | 524 +-
hl/test/test_packet_vlen.c | 1694 ++
hl/test/test_table.c | 37 +-
hl/test/test_table_be.h5 | Bin 55912 -> 55912 bytes
hl/test/test_table_cray.h5 | Bin 55912 -> 55912 bytes
hl/test/test_table_le.h5 | Bin 53880 -> 53880 bytes
hl/tools/CMakeLists.txt | 64 +-
hl/tools/CMakeTests.cmake | 58 -
hl/tools/Makefile.am | 4 +-
hl/tools/Makefile.in | 120 +-
hl/tools/gif2h5/CMakeLists.txt | 64 +
hl/tools/gif2h5/CMakeTests.cmake | 58 +
hl/tools/gif2h5/Makefile.in | 121 +-
hl/tools/gif2h5/h52giftest.sh.in | 2 +-
hl/tools/gif2h5/hdf2gif.c | 2 +-
hl/tools/gif2h5/testfiles/{REAMDE => README} | 0
hl/tools/h5watch/CMakeLists.txt | 59 +
hl/tools/h5watch/CMakeTests.cmake | 191 +
hl/tools/h5watch/Makefile.am | 44 +
hl/tools/h5watch/Makefile.in | 1501 ++
hl/tools/h5watch/extend_dset.c | 502 +
hl/tools/h5watch/h5watch.c | 970 +
hl/tools/h5watch/h5watchgentest.c | 350 +
hl/tools/h5watch/swmr_check_compat_vfd.c | 59 +
hl/tools/h5watch/testh5watch.sh.in | 391 +
hl/tools/testfiles/w-err-cmpd1.ddl | 2 +
hl/tools/testfiles/w-err-cmpd2.ddl | 2 +
hl/tools/testfiles/w-err-cmpd3.ddl | 2 +
hl/tools/testfiles/w-err-cmpd4.ddl | 2 +
hl/tools/testfiles/w-err-cmpd5.ddl | 2 +
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java/examples/Makefile.am | 31 +
java/examples/Makefile.in | 1429 ++
java/examples/datasets/CMakeLists.txt | 141 +
java/examples/datasets/H5Ex_D_Alloc.java | 301 +
java/examples/datasets/H5Ex_D_Checksum.java | 347 +
java/examples/datasets/H5Ex_D_Chunk.java | 366 +
java/examples/datasets/H5Ex_D_Compact.java | 289 +
java/examples/datasets/H5Ex_D_External.java | 238 +
java/examples/datasets/H5Ex_D_FillValue.java | 246 +
java/examples/datasets/H5Ex_D_Gzip.java | 336 +
java/examples/datasets/H5Ex_D_Hyperslab.java | 269 +
java/examples/datasets/H5Ex_D_Nbit.java | 305 +
java/examples/datasets/H5Ex_D_ReadWrite.java | 179 +
java/examples/datasets/H5Ex_D_Shuffle.java | 373 +
java/examples/datasets/H5Ex_D_Sofloat.java | 356 +
java/examples/datasets/H5Ex_D_Soint.java | 335 +
java/examples/datasets/H5Ex_D_Szip.java | 337 +
java/examples/datasets/H5Ex_D_Transform.java | 250 +
java/examples/datasets/H5Ex_D_UnlimitedAdd.java | 393 +
java/examples/datasets/H5Ex_D_UnlimitedGzip.java | 504 +
java/examples/datasets/H5Ex_D_UnlimitedMod.java | 379 +
java/examples/datasets/Makefile.am | 78 +
java/examples/datasets/Makefile.in | 1309 ++
java/examples/datasets/runExample.sh.in | 405 +
java/examples/datatypes/CMakeLists.txt | 112 +
java/examples/datatypes/H5Ex_T_Array.java | 282 +
java/examples/datatypes/H5Ex_T_ArrayAttribute.java | 322 +
java/examples/datatypes/H5Ex_T_Bit.java | 227 +
java/examples/datatypes/H5Ex_T_BitAttribute.java | 267 +
java/examples/datatypes/H5Ex_T_Commit.java | 265 +
java/examples/datatypes/H5Ex_T_Compound.java | 443 +
.../datatypes/H5Ex_T_CompoundAttribute.java | 486 +
java/examples/datatypes/H5Ex_T_Float.java | 227 +
java/examples/datatypes/H5Ex_T_FloatAttribute.java | 263 +
java/examples/datatypes/H5Ex_T_Integer.java | 226 +
.../datatypes/H5Ex_T_IntegerAttribute.java | 263 +
.../examples/datatypes/H5Ex_T_ObjectReference.java | 347 +
.../datatypes/H5Ex_T_ObjectReferenceAttribute.java | 389 +
java/examples/datatypes/H5Ex_T_Opaque.java | 270 +
.../examples/datatypes/H5Ex_T_OpaqueAttribute.java | 307 +
java/examples/datatypes/H5Ex_T_String.java | 311 +
.../examples/datatypes/H5Ex_T_StringAttribute.java | 351 +
java/examples/datatypes/H5Ex_T_VLString.java | 138 +
java/examples/datatypes/Makefile.am | 78 +
java/examples/datatypes/Makefile.in | 1309 ++
java/examples/datatypes/runExample.sh.in | 400 +
java/examples/groups/CMakeLists.txt | 141 +
java/examples/groups/H5Ex_G_Compact.java | 266 +
java/examples/groups/H5Ex_G_Corder.java | 121 +
java/examples/groups/H5Ex_G_Create.java | 94 +
java/examples/groups/H5Ex_G_Intermediate.java | 125 +
java/examples/groups/H5Ex_G_Iterate.java | 119 +
java/examples/groups/H5Ex_G_Phase.java | 241 +
java/examples/groups/H5Ex_G_Traverse.java | 167 +
java/examples/groups/H5Ex_G_Visit.java | 152 +
java/examples/groups/Makefile.am | 68 +
java/examples/groups/Makefile.in | 1298 ++
java/examples/groups/h5ex_g_iterate.h5 | Bin 0 -> 2928 bytes
java/examples/groups/h5ex_g_visit.h5 | Bin 0 -> 6312 bytes
java/examples/groups/runExample.sh.in | 341 +
java/examples/intro/CMakeLists.txt | 115 +
java/examples/intro/H5_CreateAttribute.java | 145 +
java/examples/intro/H5_CreateDataset.java | 97 +
java/examples/intro/H5_CreateFile.java | 55 +
java/examples/intro/H5_CreateGroup.java | 76 +
.../intro/H5_CreateGroupAbsoluteRelative.java | 118 +
java/examples/intro/H5_CreateGroupDataset.java | 207 +
java/examples/intro/H5_ReadWrite.java | 112 +
java/examples/intro/Makefile.am | 67 +
java/examples/intro/Makefile.in | 1298 ++
java/examples/intro/runExample.sh.in | 290 +
.../testfiles/examples.datasets.H5Ex_D_Alloc.txt | 16 +
.../examples.datasets.H5Ex_D_Checksum.txt | 3 +
.../testfiles/examples.datasets.H5Ex_D_Chunk.txt | 26 +
.../testfiles/examples.datasets.H5Ex_D_Compact.txt | 8 +
.../examples.datasets.H5Ex_D_External.txt | 7 +
.../examples.datasets.H5Ex_D_FillValue.txt | 20 +
.../testfiles/examples.datasets.H5Ex_D_Gzip.txt | 3 +
.../examples.datasets.H5Ex_D_Hyperslab.txt | 24 +
.../testfiles/examples.datasets.H5Ex_D_Nbit.txt | 3 +
.../examples.datasets.H5Ex_D_ReadWrite.txt | 6 +
.../testfiles/examples.datasets.H5Ex_D_Shuffle.txt | 5 +
.../testfiles/examples.datasets.H5Ex_D_Sofloat.txt | 6 +
.../testfiles/examples.datasets.H5Ex_D_Soint.txt | 3 +
.../testfiles/examples.datasets.H5Ex_D_Szip.txt | 3 +
.../examples.datasets.H5Ex_D_Transform.txt | 15 +
.../examples.datasets.H5Ex_D_UnlimitedAdd.txt | 14 +
.../examples.datasets.H5Ex_D_UnlimitedGzip.txt | 16 +
.../examples.datasets.H5Ex_D_UnlimitedMod.txt | 14 +
.../testfiles/examples.datatypes.H5Ex_T_Array.txt | 21 +
.../examples.datatypes.H5Ex_T_ArrayAttribute.txt | 21 +
.../testfiles/examples.datatypes.H5Ex_T_Bit.txt | 6 +
.../examples.datatypes.H5Ex_T_BitAttribute.txt | 6 +
.../testfiles/examples.datatypes.H5Ex_T_Commit.txt | 6 +
.../examples.datatypes.H5Ex_T_Compound.txt | 25 +
...examples.datatypes.H5Ex_T_CompoundAttribute.txt | 25 +
.../testfiles/examples.datatypes.H5Ex_T_Float.txt | 6 +
.../examples.datatypes.H5Ex_T_FloatAttribute.txt | 6 +
.../examples.datatypes.H5Ex_T_Integer.txt | 6 +
.../examples.datatypes.H5Ex_T_IntegerAttribute.txt | 6 +
.../examples.datatypes.H5Ex_T_ObjectReference.txt | 4 +
...s.datatypes.H5Ex_T_ObjectReferenceAttribute.txt | 4 +
.../testfiles/examples.datatypes.H5Ex_T_Opaque.txt | 6 +
.../examples.datatypes.H5Ex_T_OpaqueAttribute.txt | 6 +
.../testfiles/examples.datatypes.H5Ex_T_String.txt | 5 +
.../examples.datatypes.H5Ex_T_StringAttribute.txt | 5 +
.../examples.datatypes.H5Ex_T_VLString.txt | 4 +
.../testfiles/examples.groups.H5Ex_G_Compact.txt | 5 +
.../testfiles/examples.groups.H5Ex_G_Corder.txt | 10 +
.../testfiles/examples.groups.H5Ex_G_Create.txt | 0
.../examples.groups.H5Ex_G_Intermediate.txt | 5 +
.../testfiles/examples.groups.H5Ex_G_Iterate.txt | 5 +
.../testfiles/examples.groups.H5Ex_G_Phase.txt | 15 +
.../testfiles/examples.groups.H5Ex_G_Visit.txt | 19 +
.../examples.intro.H5_CreateAttribute.txt | 0
.../testfiles/examples.intro.H5_CreateDataset.txt | 0
.../testfiles/examples.intro.H5_CreateFile.txt | 0
.../testfiles/examples.intro.H5_CreateGroup.txt | 0
...amples.intro.H5_CreateGroupAbsoluteRelative.txt | 0
.../examples.intro.H5_CreateGroupDataset.txt | 0
.../testfiles/examples.intro.H5_ReadWrite.txt | 0
java/lib/ext/slf4j-nop-1.7.5.jar | Bin 0 -> 4091 bytes
java/lib/ext/slf4j-simple-1.7.5.jar | Bin 0 -> 10680 bytes
java/lib/hamcrest-core.jar | Bin 0 -> 45024 bytes
java/lib/junit.jar | Bin 0 -> 245039 bytes
java/lib/simplelogger.properties | 36 +
java/lib/slf4j-api-1.7.5.jar | Bin 0 -> 26084 bytes
java/src/CMakeLists.txt | 8 +
java/src/Makefile.am | 139 +
java/src/Makefile.in | 1050 +
java/src/hdf/CMakeLists.txt | 4 +
java/src/hdf/hdf5lib/CMakeLists.txt | 127 +
java/src/hdf/hdf5lib/H5.java | 9422 +++++++++
java/src/hdf/hdf5lib/HDF5Constants.java | 1883 ++
java/src/hdf/hdf5lib/HDF5GroupInfo.java | 171 +
java/src/hdf/hdf5lib/HDFArray.java | 1096 +
java/src/hdf/hdf5lib/HDFNativeData.java | 481 +
java/src/hdf/hdf5lib/callbacks/Callbacks.java | 33 +
java/src/hdf/hdf5lib/callbacks/H5A_iterate_cb.java | 23 +
java/src/hdf/hdf5lib/callbacks/H5A_iterate_t.java | 22 +
java/src/hdf/hdf5lib/callbacks/H5D_append_cb.java | 21 +
java/src/hdf/hdf5lib/callbacks/H5D_append_t.java | 22 +
java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java | 21 +
java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java | 22 +
java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java | 23 +
java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java | 22 +
java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java | 23 +
java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java | 22 +
java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java | 23 +
java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java | 22 +
.../hdf5lib/callbacks/H5P_cls_close_func_cb.java | 21 +
.../hdf5lib/callbacks/H5P_cls_close_func_t.java | 22 +
.../hdf5lib/callbacks/H5P_cls_copy_func_cb.java | 21 +
.../hdf/hdf5lib/callbacks/H5P_cls_copy_func_t.java | 22 +
.../hdf5lib/callbacks/H5P_cls_create_func_cb.java | 21 +
.../hdf5lib/callbacks/H5P_cls_create_func_t.java | 22 +
java/src/hdf/hdf5lib/callbacks/H5P_iterate_cb.java | 21 +
java/src/hdf/hdf5lib/callbacks/H5P_iterate_t.java | 22 +
.../hdf5lib/callbacks/H5P_prp_close_func_cb.java | 21 +
.../hdf5lib/callbacks/H5P_prp_compare_func_cb.java | 21 +
.../hdf5lib/callbacks/H5P_prp_copy_func_cb.java | 21 +
.../hdf5lib/callbacks/H5P_prp_create_func_cb.java | 21 +
.../hdf5lib/callbacks/H5P_prp_delete_func_cb.java | 21 +
.../hdf/hdf5lib/callbacks/H5P_prp_get_func_cb.java | 21 +
.../hdf/hdf5lib/callbacks/H5P_prp_set_func_cb.java | 21 +
.../hdf/hdf5lib/exceptions/HDF5AtomException.java | 44 +
.../hdf5lib/exceptions/HDF5AttributeException.java | 42 +
.../hdf/hdf5lib/exceptions/HDF5BtreeException.java | 42 +
.../exceptions/HDF5DataFiltersException.java | 42 +
.../exceptions/HDF5DataStorageException.java | 43 +
.../exceptions/HDF5DatasetInterfaceException.java | 42 +
.../HDF5DataspaceInterfaceException.java | 43 +
.../exceptions/HDF5DatatypeInterfaceException.java | 43 +
java/src/hdf/hdf5lib/exceptions/HDF5Exception.java | 68 +
.../exceptions/HDF5ExternalFileListException.java | 43 +
.../exceptions/HDF5FileInterfaceException.java | 43 +
.../exceptions/HDF5FunctionArgumentException.java | 43 +
.../exceptions/HDF5FunctionEntryExitException.java | 43 +
.../hdf/hdf5lib/exceptions/HDF5HeapException.java | 43 +
.../exceptions/HDF5InternalErrorException.java | 43 +
.../hdf/hdf5lib/exceptions/HDF5JavaException.java | 45 +
.../hdf5lib/exceptions/HDF5LibraryException.java | 383 +
.../exceptions/HDF5LowLevelIOException.java | 43 +
.../exceptions/HDF5MetaDataCacheException.java | 43 +
.../exceptions/HDF5ObjectHeaderException.java | 43 +
.../HDF5PropertyListInterfaceException.java | 43 +
.../hdf5lib/exceptions/HDF5ReferenceException.java | 37 +
.../HDF5ResourceUnavailableException.java | 43 +
.../exceptions/HDF5SymbolTableException.java | 43 +
.../hdf/hdf5lib/structs/H5AC_cache_config_t.java | 99 +
java/src/hdf/hdf5lib/structs/H5A_info_t.java | 34 +
java/src/hdf/hdf5lib/structs/H5E_error2_t.java | 41 +
java/src/hdf/hdf5lib/structs/H5F_info2_t.java | 47 +
java/src/hdf/hdf5lib/structs/H5G_info_t.java | 27 +
java/src/hdf/hdf5lib/structs/H5L_info_t.java | 38 +
java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java | 49 +
java/src/hdf/hdf5lib/structs/H5O_info_t.java | 54 +
java/src/hdf/hdf5lib/structs/H5_ih_info_t.java | 31 +
java/src/hdf/overview.html | 96 +
java/src/jni/CMakeLists.txt | 85 +
java/src/jni/Makefile.am | 44 +
java/src/jni/Makefile.in | 1507 ++
java/src/jni/exceptionImp.c | 414 +
java/src/jni/exceptionImp.h | 67 +
java/src/jni/h5Constants.c | 694 +
java/src/jni/h5Imp.c | 181 +
java/src/jni/h5Imp.h | 95 +
java/src/jni/h5aImp.c | 879 +
java/src/jni/h5aImp.h | 273 +
java/src/jni/h5dImp.c | 1782 ++
java/src/jni/h5dImp.h | 335 +
java/src/jni/h5eImp.c | 524 +
java/src/jni/h5eImp.h | 167 +
java/src/jni/h5fImp.c | 589 +
java/src/jni/h5fImp.h | 230 +
java/src/jni/h5gImp.c | 281 +
java/src/jni/h5gImp.h | 112 +
java/src/jni/h5iImp.c | 289 +
java/src/jni/h5iImp.h | 143 +
java/src/jni/h5jni.h | 249 +
java/src/jni/h5lImp.c | 736 +
java/src/jni/h5lImp.h | 183 +
java/src/jni/h5oImp.c | 790 +
java/src/jni/h5oImp.h | 191 +
java/src/jni/h5pImp.c | 5532 +++++
java/src/jni/h5pImp.h | 1354 ++
java/src/jni/h5plImp.c | 64 +
java/src/jni/h5plImp.h | 46 +
java/src/jni/h5rImp.c | 324 +
java/src/jni/h5rImp.h | 78 +
java/src/jni/h5sImp.c | 1408 ++
java/src/jni/h5sImp.h | 288 +
java/src/jni/h5tImp.c | 1612 ++
java/src/jni/h5tImp.h | 566 +
java/src/jni/h5util.c | 2592 +++
java/src/jni/h5util.h | 108 +
java/src/jni/h5zImp.c | 84 +
java/src/jni/h5zImp.h | 55 +
java/src/jni/nativeData.c | 1195 ++
java/src/jni/nativeData.h | 115 +
java/test/CMakeLists.txt | 132 +
java/test/JUnit-interface.ert | 2 +
java/test/JUnit-interface.txt | 661 +
java/test/Makefile.am | 104 +
java/test/Makefile.in | 1336 ++
java/test/TestAll.java | 40 +
java/test/TestH5.java | 257 +
java/test/TestH5A.java | 1119 ++
java/test/TestH5D.java | 944 +
java/test/TestH5Dparams.java | 144 +
java/test/TestH5Dplist.java | 216 +
java/test/TestH5E.java | 553 +
java/test/TestH5Edefault.java | 564 +
java/test/TestH5Eregister.java | 78 +
java/test/TestH5F.java | 332 +
java/test/TestH5Fbasic.java | 320 +
java/test/TestH5Fparams.java | 215 +
java/test/TestH5Fswmr.java | 118 +
java/test/TestH5G.java | 505 +
java/test/TestH5Gbasic.java | 381 +
java/test/TestH5Giterate.java | 136 +
java/test/TestH5Lbasic.java | 371 +
java/test/TestH5Lcreate.java | 819 +
java/test/TestH5Lparams.java | 231 +
java/test/TestH5Obasic.java | 488 +
java/test/TestH5Ocopy.java | 365 +
java/test/TestH5Ocreate.java | 562 +
java/test/TestH5Oparams.java | 164 +
java/test/TestH5P.java | 1222 ++
java/test/TestH5PData.java | 170 +
java/test/TestH5PL.java | 61 +
java/test/TestH5Pfapl.java | 1381 ++
java/test/TestH5Plist.java | 1013 +
java/test/TestH5Pvirtual.java | 433 +
java/test/TestH5R.java | 335 +
java/test/TestH5S.java | 590 +
java/test/TestH5Sbasic.java | 247 +
java/test/TestH5T.java | 459 +
java/test/TestH5Tbasic.java | 161 +
java/test/TestH5Tparams.java | 399 +
java/test/TestH5Z.java | 100 +
java/test/h5ex_g_iterate.orig | Bin 0 -> 2928 bytes
java/test/junit.sh.in | 263 +
m4/aclocal_fc.m4 | 356 +-
m4/ax_check_class.m4 | 144 +
m4/ax_check_classpath.m4 | 60 +
m4/ax_check_java_home.m4 | 80 +
m4/ax_check_junit.m4 | 70 +
m4/ax_check_rqrd_class.m4 | 62 +
m4/ax_java_check_class.m4 | 85 +
m4/ax_java_options.m4 | 48 +
m4/ax_jni_include_dir.m4 | 132 +
m4/ax_prog_jar.m4 | 49 +
m4/ax_prog_java.m4 | 115 +
m4/ax_prog_java_cc.m4 | 104 +
m4/ax_prog_java_works.m4 | 134 +
m4/ax_prog_javac.m4 | 79 +
m4/ax_prog_javac_works.m4 | 72 +
m4/ax_prog_javadoc.m4 | 50 +
m4/ax_prog_javah.m4 | 64 +
m4/ax_try_compile_java.m4 | 55 +
m4/ax_try_run_java.m4 | 56 +
release_docs/HISTORY-1_0-1_8_0_rc3.txt | 8 +-
release_docs/HISTORY-1_8.txt | 10947 ----------
release_docs/HISTORY-1_8_0-1_10_0.txt | 1742 ++
release_docs/INSTALL | 542 +-
release_docs/INSTALL_CMake.txt | 137 +-
release_docs/INSTALL_Cygwin.txt | 13 +-
release_docs/INSTALL_Windows.txt | 6 +-
release_docs/RELEASE.txt | 813 +-
release_docs/USING_CMake_Examples.txt | 12 +-
release_docs/USING_HDF5_CMake.txt | 106 +-
release_docs/USING_HDF5_VS.txt | 58 +-
src/CMakeLists.txt | 410 +-
src/H5.c | 219 +-
src/H5A.c | 317 +-
src/H5AC.c | 4636 ++---
src/H5AClog.c | 892 +
src/H5ACmodule.h | 35 +
src/H5ACmpio.c | 2253 +++
src/H5ACpkg.h | 158 +-
src/H5ACprivate.h | 340 +-
src/H5ACpublic.h | 9 +-
src/H5Abtree2.c | 167 +-
src/H5Adense.c | 28 +-
src/H5Adeprec.c | 64 +-
src/H5Aint.c | 426 +-
src/H5Amodule.h | 35 +
src/H5Apkg.h | 25 +-
src/H5Atest.c | 6 +-
src/H5B.c | 253 +-
src/H5B2.c | 457 +-
src/H5B2cache.c | 1382 +-
src/H5B2dbg.c | 157 +-
src/H5B2hdr.c | 210 +-
src/H5B2int.c | 2499 ++-
src/H5B2module.h | 36 +
src/H5B2pkg.h | 188 +-
src/H5B2private.h | 25 +-
src/H5B2stat.c | 4 +-
src/H5B2test.c | 317 +-
src/H5Bcache.c | 391 +-
src/H5Bdbg.c | 29 +-
src/H5Bmodule.h | 35 +
src/H5Bpkg.h | 10 +-
src/H5Bprivate.h | 5 +-
src/H5C.c | 8609 +++++---
src/H5CS.c | 167 +-
src/H5CSprivate.h | 22 +-
src/H5Cmodule.h | 35 +
src/H5Cmpio.c | 1504 ++
src/H5Cpkg.h | 7060 ++++---
src/H5Cprivate.h | 1952 +-
src/H5D.c | 317 +-
src/H5Dbtree.c | 387 +-
src/H5Dbtree2.c | 1559 ++
src/H5Dchunk.c | 2706 ++-
src/H5Dcompact.c | 59 +-
src/H5Dcontig.c | 163 +-
src/H5Ddbg.c | 27 +-
src/H5Ddeprec.c | 183 +-
src/H5Dearray.c | 1813 ++
src/H5Defl.c | 192 +-
src/H5Dfarray.c | 1706 ++
src/H5Dfill.c | 9 +-
src/H5Dint.c | 1547 +-
src/H5Dio.c | 166 +-
src/H5Dlayout.c | 453 +-
src/H5Dmodule.h | 35 +
src/H5Dmpio.c | 75 +-
src/H5Dnone.c | 497 +
src/H5Doh.c | 92 +-
src/H5Dpkg.h | 210 +-
src/H5Dprivate.h | 34 +-
src/H5Dpublic.h | 31 +-
src/H5Dscatgath.c | 10 +-
src/H5Dselect.c | 4 +-
src/H5Dsingle.c | 557 +
src/H5Dtest.c | 43 +-
src/H5Dvirtual.c | 2947 +++
src/H5E.c | 153 +-
src/H5EA.c | 1150 ++
src/H5EAcache.c | 2204 ++
src/H5EAdbg.c | 478 +
src/H5EAdblkpage.c | 322 +
src/H5EAdblock.c | 491 +
src/H5EAhdr.c | 810 +
src/H5EAiblock.c | 479 +
src/H5EAint.c | 141 +
src/H5EAmodule.h | 35 +
src/H5EApkg.h | 491 +
src/H5EAprivate.h | 159 +
src/H5EAsblock.c | 446 +
src/H5EAstat.c | 116 +
src/H5EAtest.c | 487 +
src/H5Edefin.h | 32 +-
src/H5Edeprec.c | 50 +-
src/H5Einit.h | 148 +-
src/H5Eint.c | 35 +-
src/H5Emodule.h | 36 +
src/H5Epkg.h | 2 +-
src/H5Eprivate.h | 83 +-
src/H5Epubgen.h | 72 +-
src/H5Eterm.h | 36 +-
src/H5F.c | 733 +-
src/H5FA.c | 885 +
src/H5FAcache.c | 1271 ++
src/H5FAdbg.c | 285 +
src/H5FAdblkpage.c | 315 +
src/H5FAdblock.c | 443 +
src/H5FAhdr.c | 565 +
src/H5FAint.c | 139 +
src/H5FAmodule.h | 35 +
src/H5FApkg.h | 331 +
src/H5FAprivate.h | 144 +
src/H5FAstat.c | 113 +
src/H5FAtest.c | 422 +
src/H5FD.c | 524 +-
src/H5FDcore.c | 381 +-
src/H5FDcore.h | 6 +-
src/H5FDdirect.c | 169 +-
src/H5FDdirect.h | 4 +-
src/H5FDdrvr_module.h | 35 +
src/H5FDfamily.c | 228 +-
src/H5FDfamily.h | 4 +-
src/H5FDint.c | 91 +-
src/H5FDlog.c | 146 +-
src/H5FDlog.h | 3 -
src/H5FDmodule.h | 35 +
src/H5FDmpi.c | 13 +-
src/H5FDmpio.c | 1158 +-
src/H5FDmpio.h | 2 +-
src/H5FDmulti.c | 296 +-
src/H5FDmulti.h | 6 +-
src/H5FDpkg.h | 7 +-
src/H5FDprivate.h | 35 +-
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src/H5FDsec2.c | 114 +-
src/H5FDsec2.h | 3 -
src/H5FDspace.c | 33 +-
src/H5FDstdio.c | 179 +-
src/H5FDstdio.h | 1 -
src/H5FDtest.c | 119 +
src/H5FDwindows.h | 20 +-
src/H5FL.c | 690 +-
src/H5FLmodule.h | 35 +
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src/H5FO.c | 2 +-
src/H5FS.c | 637 +-
src/H5FScache.c | 1564 +-
src/H5FSdbg.c | 127 +-
src/H5FSint.c | 145 +
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src/H5FSprivate.h | 34 +-
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src/H5FSsection.c | 461 +-
src/H5FSstat.c | 16 +-
src/H5FStest.c | 31 +-
src/H5Faccum.c | 64 +-
src/H5Fcwfs.c | 14 +-
src/H5Fdbg.c | 6 +-
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src/H5Fefc.c | 13 +-
src/H5Ffake.c | 29 +-
src/H5Fint.c | 600 +-
src/H5Fio.c | 273 +-
src/H5Fmodule.h | 35 +
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src/H5Fmpi.c | 100 +-
src/H5Fpkg.h | 171 +-
src/H5Fprivate.h | 198 +-
src/H5Fpublic.h | 129 +-
src/H5Fquery.c | 87 +-
src/H5Fsfile.c | 2 +-
src/H5Fsuper.c | 773 +-
src/H5Fsuper_cache.c | 1532 +-
src/H5Ftest.c | 10 +-
src/H5G.c | 351 +-
src/H5Gbtree2.c | 81 +-
src/H5Gcache.c | 419 +-
src/H5Gcompact.c | 12 +-
src/H5Gdense.c | 20 +-
src/H5Gdeprec.c | 94 +-
src/H5Gent.c | 14 +-
src/H5Gint.c | 152 +-
src/H5Glink.c | 6 +-
src/H5Gloc.c | 16 +-
src/H5Gmodule.h | 35 +
src/H5Gname.c | 13 +-
src/H5Gnode.c | 47 +-
src/H5Gobj.c | 52 +-
src/H5Goh.c | 38 +-
src/H5Gpkg.h | 7 +-
src/H5Gprivate.h | 22 +-
src/H5Gpublic.h | 2 +
src/H5Groot.c | 4 +-
src/H5Gstab.c | 70 +-
src/H5Gtest.c | 57 +-
src/H5Gtraverse.c | 25 +-
src/H5HF.c | 180 +-
src/H5HFbtree2.c | 494 +-
src/H5HFcache.c | 3560 +++-
src/H5HFdbg.c | 91 +-
src/H5HFdblock.c | 40 +-
src/H5HFdtable.c | 9 +-
src/H5HFhdr.c | 41 +-
src/H5HFhuge.c | 153 +-
src/H5HFiblock.c | 89 +-
src/H5HFint.c | 146 +
src/H5HFiter.c | 5 +-
src/H5HFman.c | 98 +-
src/H5HFmodule.h | 35 +
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src/H5HFspace.c | 11 +-
src/H5HFstat.c | 3 +-
src/H5HFtest.c | 19 +-
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src/H5HG.c | 134 +-
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src/H5HGdbg.c | 4 +-
src/H5HGmodule.h | 35 +
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src/H5HGquery.c | 2 +-
src/H5HL.c | 916 +-
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src/H5HLdbg.c | 77 +-
src/H5HLdblk.c | 282 +
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src/H5HLmodule.h | 35 +
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src/H5HLprfx.c | 166 +
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src/H5I.c | 432 +-
src/H5Imodule.h | 35 +
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src/H5Iprivate.h | 4 +-
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src/H5Itest.c | 6 +-
src/H5L.c | 415 +-
src/H5Lexternal.c | 132 +-
src/H5Lmodule.h | 36 +
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src/H5MFaggr.c | 18 +-
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src/H5MM.c | 412 +-
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src/H5MP.c | 11 +-
src/H5MPmodule.h | 35 +
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src/H5O.c | 559 +-
src/H5Oainfo.c | 34 +-
src/H5Oalloc.c | 103 +-
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src/H5Oattribute.c | 88 +-
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src/H5Omessage.c | 129 +-
src/H5Omodule.h | 35 +
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src/H5Oname.c | 13 +-
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src/H5Opkg.h | 139 +-
src/H5Opline.c | 11 +-
src/H5Oprivate.h | 252 +-
src/H5Oproxy.c | 900 +
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src/H5Orefcount.c | 13 +-
src/H5Osdspace.c | 16 +-
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src/H5Oshared.h | 6 +-
src/H5Oshmesg.c | 11 +-
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src/H5Ounknown.c | 3 +-
src/H5P.c | 147 +-
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src/H5Pacpl.c | 4 +-
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src/H5Pdeprec.c | 109 +-
src/H5Pdxpl.c | 960 +-
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test/SWMR_UseCase_UG.txt | 223 +
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test/accum_swmr_reader.c | 99 +
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test/big.c | 30 +-
test/bittests.c | 2 +-
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test/cache.c | 17344 +++++++++++-----
test/cache_api.c | 402 +-
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test/cache_common.h | 301 +-
test/cache_logging.c | 176 +
test/cache_tagging.c | 4017 ++++
test/chunk_info.c | 153 +
test/cmpd_dset.c | 38 +-
test/cork.c | 2191 ++
test/corrupt_stab_msg.h5 | Bin 2928 -> 2928 bytes
test/cross_read.c | 2 +-
test/dangle.c | 129 +
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test/dtypes.c | 328 +-
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test/gen_bogus.c | 78 +-
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test/swmr_generator.c | 353 +
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test/testframe.c | 45 +-
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tools/testfiles/tvms.h5 | Bin 2288 -> 2288 bytes
tools/testfiles/vds/1_a.h5 | Bin 0 -> 4856 bytes
tools/testfiles/vds/1_b.h5 | Bin 0 -> 4611 bytes
tools/testfiles/vds/1_c.h5 | Bin 0 -> 4856 bytes
tools/testfiles/vds/1_d.h5 | Bin 0 -> 4611 bytes
tools/testfiles/vds/1_e.h5 | Bin 0 -> 4856 bytes
tools/testfiles/vds/1_f.h5 | Bin 0 -> 4611 bytes
tools/testfiles/vds/1_vds.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/2_a.h5 | Bin 0 -> 4576 bytes
tools/testfiles/vds/2_b.h5 | Bin 0 -> 4578 bytes
tools/testfiles/vds/2_c.h5 | Bin 0 -> 4576 bytes
tools/testfiles/vds/2_d.h5 | Bin 0 -> 4578 bytes
tools/testfiles/vds/2_e.h5 | Bin 0 -> 4578 bytes
tools/testfiles/vds/2_vds.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/3_1_vds.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/3_2_vds.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/4_0.h5 | Bin 0 -> 4581 bytes
tools/testfiles/vds/4_1.h5 | Bin 0 -> 4581 bytes
tools/testfiles/vds/4_2.h5 | Bin 0 -> 4581 bytes
tools/testfiles/vds/4_vds.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/5_a.h5 | Bin 0 -> 4581 bytes
tools/testfiles/vds/5_b.h5 | Bin 0 -> 4581 bytes
tools/testfiles/vds/5_c.h5 | Bin 0 -> 4581 bytes
tools/testfiles/vds/5_vds.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/a.h5 | Bin 0 -> 7736 bytes
tools/testfiles/vds/b.h5 | Bin 0 -> 7736 bytes
tools/testfiles/vds/c.h5 | Bin 0 -> 7736 bytes
tools/testfiles/vds/d.h5 | Bin 0 -> 7736 bytes
tools/testfiles/vds/f-0.h5 | Bin 0 -> 4144 bytes
tools/testfiles/vds/f-3.h5 | Bin 0 -> 4144 bytes
tools/testfiles/vds/tvds-1.ddl | 100 +
tools/testfiles/vds/tvds-1.ls | 14 +
tools/testfiles/vds/tvds-2.ddl | 58 +
tools/testfiles/vds/tvds-2.ls | 13 +
tools/testfiles/vds/tvds-3_1.ddl | 135 +
tools/testfiles/vds/tvds-3_1.ls | 14 +
tools/testfiles/vds/tvds-3_2.ddl | 166 +
tools/testfiles/vds/tvds-3_2.ls | 13 +
tools/testfiles/vds/tvds-4.ddl | 46 +
tools/testfiles/vds/tvds-4.ls | 9 +
tools/testfiles/vds/tvds-5.ddl | 46 +
tools/testfiles/vds/tvds-5.ls | 11 +
tools/testfiles/vds/tvds_layout-1.ddl | 226 +
tools/testfiles/vds/tvds_layout-2.ddl | 164 +
tools/testfiles/vds/tvds_layout-3_1.ddl | 261 +
tools/testfiles/vds/tvds_layout-3_2.ddl | 272 +
tools/testfiles/vds/tvds_layout-4.ddl | 72 +
tools/testfiles/vds/tvds_layout-5.ddl | 112 +
tools/testfiles/vds/vds-eiger.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/vds-first.ddl | 210 +
tools/testfiles/vds/vds-gap1.ddl | 58 +
tools/testfiles/vds/vds-gap2.ddl | 210 +
tools/testfiles/vds/vds-percival-unlim-maxmin.h5 | Bin 0 -> 5496 bytes
tools/testfiles/vds/vds_layout-eiger.ddl | 81 +
tools/testfiles/vds/vds_layout-maxmin.ddl | 416 +
2569 files changed, 473989 insertions(+), 234579 deletions(-)
diff --cc debian/changelog
index 9b0206e,fda1951..8ec4285
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,10 -1,87 +1,49 @@@
-hdf5 (1.10.0-patch1+docs-1~exp4) experimental; urgency=medium
-
- * Move setting of substvar ${hdf5-mpi-dev} into dh_makeshlib; it was
- ignored when set at configure step
-
- -- Gilles Filippini <pini at debian.org> Fri, 22 Jul 2016 21:43:25 +0200
-
-hdf5 (1.10.0-patch1+docs-1~exp3) experimental; urgency=medium
-
- * Set default plugins dir to /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/plugins
- * Symbols files:
- - CPP: use flag arch-its=64 instead of enumerating non 64 bits
- architectures
-
- -- Gilles Filippini <pini at debian.org> Tue, 28 Jun 2016 22:47:41 +0200
-
-hdf5 (1.10.0-patch1+docs-1~exp2) experimental; urgency=medium
-
- * Symbols files:
- - Drop ~alpha, ~pre and -patch parts of 1.10.0 release symbols.
- They all belong to 1.10.0 release.
- - Reintroduce previously dropped cpp symbols, with flag
- arch-bits!=64.
-
- -- Gilles Filippini <pini at debian.org> Tue, 24 May 2016 23:56:39 +0200
-
-hdf5 (1.10.0-patch1+docs-1~exp1) experimental; urgency=medium
-
- * New upstream release
- * PHP7.0 transition: Build-Depends-Indep: php-cli (instead of
- php5-cli)
- * Symbols files:
- - Update from new release
- - Fix arch specific symbols for remaining architectures but sh4 and
- powerpcspe
- * Standars-Version: bump to 3.9.8 (no changes)
-
- -- Gilles Filippini <pini at debian.org> Sat, 21 May 2016 15:54:13 +0200
-
-hdf5 (1.10.0+docs-1~exp3) experimental; urgency=medium
-
- * debian/control.in:
- * Use Build-Depends-Indep
- * Drop - now - useless versioned Build-Depends on dpkg-dev
- * Symbols files: fix arch specific symbols for release architectures
-
- -- Gilles Filippini <pini at debian.org> Thu, 21 Apr 2016 14:20:09 +0200
-
-hdf5 (1.10.0+docs-1~exp2) experimental; urgency=medium
-
- * debian/rules:
- - Migrate to dh with compat=10
- - Drop flag OMPI_MCA_disable_memory_allocator (old workaround for
- bug #531522)
- * Drop *-dbg packages, superseded by automatic debug packages
- * Symbols files:
- - Start fixing new arch-specific symbols (arch-bits=64)
- - Temporarily set DPKG_GENSYMBOLS_CHECK_LEVEL=0 to catch all other
- diffs at once
-
- -- Gilles Filippini <pini at debian.org> Mon, 18 Apr 2016 18:58:54 +0200
-
-hdf5 (1.10.0+docs-1~exp1) experimental; urgency=medium
++hdf5 (1.10.0-patch1+docs-1) unstable; urgency=medium
+
+ * New upstream release
- * Integration of Java HDF5 JNI into the source tree (not enabled in
- the build)
++ * Major API change: hid_t type is now 64 bit integer (instead of int)
++ * Integration of Java HDF5 JNI into the source tree (not yet enabled
++ in the build)
+
+ * Refresh lintian overrides
+ * Drop patches:
+ - format-not-a-string-literal-and-no-format-arguments.patch: fixed
+ upstream
+ - hurd-sigsetjmp.patch: no more needed now that #800900 is fixed
+ * Refresh other patches
+ * libhdf5-cpp-<SONAME_CXX>: drop versioned dependency on libhdf5-<SONAME>
+ to ease future transitions
++ * debian/control.in:
++ - Use Build-Depends-Indep
++ - Drop - now - useless versioned Build-Depends on dpkg-dev
++ - Drop *-dbg packages, superseded by automatic debug packages
++ - Standars-Version: bump to 3.9.8 (no changes)
+ * debian/rules:
++ - Migrate to dh with compat=10
+ - improve soname retrieval
++ - Drop flag OMPI_MCA_disable_memory_allocator (old workaround for
++ bug #531522)
+ - replace deprecated '--enable-production' with '--enable-build-mode'
++ - Move setting of substvar ${hdf5-mpi-dev} into dh_makeshlib; it was
++ ignored when set at configure step
++ - Set default plugins dir to /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/plugins
++ (closes: #826522)
+ * debian/watch: use dirversionmangle to have upstream releases properly
+ sorted
- * Bump Standards-Version to 3.9.7 (no change)
++ * Symbols files:
++ - Update from new release
++ - Temporarily set DPKG_GENSYMBOLS_CHECK_LEVEL=0
++ - Fix arch specific symbols
++
++ -- Gilles Filippini <pini at debian.org> Sat, 05 Nov 2016 23:23:33 +0100
++
+hdf5 (1.8.16+docs-8) unstable; urgency=medium
+
+ * Build-Depends: php-cli instead of php5-cli (closes: #821678)
+ * debian/watch: use dirversionmangle to have upstream versions
+ properly sorted
- -- Gilles Filippini <pini at debian.org> Sat, 16 Apr 2016 09:24:06 +0200
+ -- Gilles Filippini <pini at debian.org> Sat, 23 Apr 2016 11:43:31 +0200
hdf5 (1.8.16+docs-7) unstable; urgency=medium
--
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