[R-pkg-team] Bug#951656: r-cran-lwgeom: FTBFS with PROJ 7.0.0 (ERROR: lazy loading failed for package 'lwgeom')

Wed Feb 19 17:35:02 GMT 2020

Source: r-cran-lwgeom
Version: 0.2-1-1
Severity: important
Tags: ftbfs
User: debian-gis at lists.debian.org
Usertags: proj-7.0

Dear Maintainer,

Your package FTBFS with PROJ 7 from experimental:

 ** byte-compile and prepare package for lazy loading
 double free or corruption (!prev)
 Aborted
 ERROR: lazy loading failed for package 'lwgeom'

The full buildlog is attached.

Kind Regards,

Bas
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dpkg-checkbuilddeps: error: Unmet build dependencies: r-cran-rcpp r-cran-units r-cran-sf
[1;33mW: Unmet build-dependency in source[0m
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building r-cran-lwgeom using existing ./r-cran-lwgeom_0.2-1.orig.tar.gz
dpkg-source: info: building r-cran-lwgeom in r-cran-lwgeom_0.2-1-2.debian.tar.xz
dpkg-source: info: building r-cran-lwgeom in r-cran-lwgeom_0.2-1-2.dsc
[0mI: Generating source changes file for original dsc[0m
dpkg-genchanges: info: not including original source code in upload
[0mI: Copying COW directory[0m
[0mI: forking: rm -rf /var/cache/pbuilder/build/cow.24003[0m
[0mI: forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow /var/cache/pbuilder/build/cow.24003[0m
[0mI: removed stale ilistfile /var/cache/pbuilder/build/cow.24003/.ilist[0m
[0mI: forking: chroot /var/cache/pbuilder/build/cow.24003 cowdancer-ilistcreate /.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ''[0m
[0mI: Invoking pbuilder[0m
[0mI: forking: pbuilder build --debbuildopts  --debbuildopts  --buildplace /var/cache/pbuilder/build/cow.24003 --buildresult /var/cache/pbuilder/result/ --mirror http://ftp.nl.debian.org/debian/ --distribution sid --no-targz --internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.24003 cow-shell' /home/bas/tmp/debian/r-cran-lwgeom_0.2-1-2.dsc[0m
[0mI: Running in no-targz mode[0m
[0mI: pbuilder: network access will be disabled during build[0m
[0mI: Current time: Wed Feb 19 15:28:24 CET 2020[0m
[0mI: pbuilder-time-stamp: 1582122504[0m
[0mI: copying local configuration[0m
[1;33mW: --override-config is not set; not updating apt.conf Read the manpage for details.[0m
[0mI: mounting /proc filesystem[0m
[0mI: mounting /sys filesystem[0m
[0mI: creating /{dev,run}/shm[0m
[0mI: mounting /dev/pts filesystem[0m
[0mI: redirecting /dev/ptmx to /dev/pts/ptmx[0m
[0mI: policy-rc.d already exists[0m
[0mI: Obtaining the cached apt archive contents[0m
[0mI: Copying source file[0m
[0mI: copying [/home/bas/tmp/debian/r-cran-lwgeom_0.2-1-2.dsc][0m
[0mI: copying [/home/bas/tmp/debian/r-cran-lwgeom_0.2-1.orig.tar.gz][0m
[0mI: copying [/home/bas/tmp/debian/r-cran-lwgeom_0.2-1-2.debian.tar.xz][0m
[0mI: Extracting source[0m
dpkg-source: warning: extracting unsigned source package (r-cran-lwgeom_0.2-1-2.dsc)
dpkg-source: info: extracting r-cran-lwgeom in r-cran-lwgeom-0.2-1
dpkg-source: info: unpacking r-cran-lwgeom_0.2-1.orig.tar.gz
dpkg-source: info: unpacking r-cran-lwgeom_0.2-1-2.debian.tar.xz
[0mI: using fakeroot in build.[0m
[0mI: Installing the build-deps[0m
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp, r-cran-units, r-cran-sf, libproj-dev, libgeos-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
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dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
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 pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however:
  Package r-cran-rcpp is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-units; however:
  Package r-cran-units is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-sf; however:
  Package r-cran-sf is not installed.
 pbuilder-satisfydepends-dummy depends on libproj-dev; however:
  Package libproj-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libgeos-dev; however:
  Package libgeos-dev is not installed.

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pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
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The following packages are RECOMMENDED but will NOT be installed:
  bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libx11-protocol-perl lynx poppler-data proj-bin publicsuffix r-cran-crayon r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-maps r-cran-maptools r-cran-raster r-cran-rpostgresql r-cran-rsqlite r-cran-sp r-cran-spatstat r-cran-testthat r-cran-tidyr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
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