[R-pkg-team] Bug#966523: Potential gcc-10 issue "error: conflicting types for =?UTF-8?Q?=E2=80=98uintptr=5Ft=E2=80=99?=" (Was: Bug#966523: r-bioc-rsubread FTBFS on 32bit: error: conflicting types for =?UTF-8?Q?=E2=80=98uintptr=5Ft=E2=80=99?=)

[Andreas Tille]

Control: tags -1 help
Control: tags -1 upstream
Control: forwarded -1 Wei Shi <wei.shi at onjcri.org.au>, Yang Liao <yang.liao at onjcri.org.au>, Gordon K Smyth <smyth at wehi.edu.au>

Hi,

unfortunately upstream has not yet responded to this mail.  My guess is
that this is a general gcc-10 issue.

Any hint how to solve this?

Kind regards

       Andreas.

On Tue, Sep 08, 2020 at 05:00:10PM +0200, Andreas Tille wrote:
> Hi,
> 
> I'm hereby forwarding a problem that was detected on the Debian packaged
> version of Rsubread.  Any idea how to fix this?
> 
> Kind regards
> 
>        Andreas.
> 
> On Thu, Jul 30, 2020 at 08:50:31AM +0300, Adrian Bunk wrote:
> > Source: r-bioc-rsubread
> > Version: 2.2.5-1
> > Severity: serious
> > Tags: ftbfs
> > 
> > https://buildd.debian.org/status/package.php?p=r-bioc-rsubread&suite=sid
> > 
> > ...
> > In file included from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9,
> >                  from HelperFunctions.h:139,
> >                  from R_wrapper.c:35:
> > /usr/include/stdint.h:96:23: error: conflicting types for ‘uintptr_t’
> >    96 | typedef unsigned int  uintptr_t;
> >       |                       ^~~~~~~~~
> > In file included from R_wrapper.c:30:
> > /usr/share/R/include/Rinterface.h:110:24: note: previous declaration of ‘uintptr_t’ was here
> >   110 |  typedef unsigned long uintptr_t;
> >       |                        ^~~~~~~~~
> > make[1]: *** [/usr/lib/R/etc/Makeconf:167: R_wrapper.o] Error 1
> 

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