[R-pkg-team] Bug#981820: r-bioc-purecn: autopkgtest failure

[Adrian Bunk]

Source: r-bioc-purecn
Version: 1.20.0+dfsg-2
Severity: serious
Control: affects -1 src:bcbio

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-purecn/10259298/log.gz

...
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_annotateTargets.R:2:1): (code run outside of `test_that()`) ─────
Error: there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
Backtrace:
    â–ˆ
 1. └─base::library(TxDb.Hsapiens.UCSC.hg19.knownGene) test_annotateTargets.R:2:0
── Error (test_processMultipleSamples.R:18:2): example output correct ──────────
Error: processMultipleSamples requires the copynumber package. 
 
This is most likely a user error due to invalid input data or 
parameters (PureCN 1.20.0). 

Backtrace:
    â–ˆ
 1. └─PureCN::processMultipleSamples(...) test_processMultipleSamples.R:18:8
 2.   └─PureCN:::.stopUserError("processMultipleSamples requires the copynumber package.")

[ FAIL 2 | WARN 13 | SKIP 1 | PASS 336 ]
Error: Test failures
Execution halted
autopkgtest [08:02:24]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [08:02:24]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
pkg-r-autopkgtest    FAIL non-zero exit status 1
autopkgtest [08:02:24]: @@@@@@@@@@@@@@@@@@@@ summary
run-unit-test        PASS
pkg-r-autopkgtest    FAIL non-zero exit status 1