[R-pkg-team] Bug#981820: r-bioc-purecn: autopkgtest failure

Andreas Tille tille at debian.org
Fri Feb 5 20:48:14 GMT 2021


Control: tags -1 help

On Thu, Feb 04, 2021 at 12:44:46PM +0200, Adrian Bunk wrote:
> ══ Failed tests ════════════════════════════════════════════════════════════════
> ── Error (test_annotateTargets.R:2:1): (code run outside of `test_that()`) ─────
> Error: there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
> Backtrace:
>     â–ˆ
>  1. └─base::library(TxDb.Hsapiens.UCSC.hg19.knownGene) test_annotateTargets.R:2:0

That's really strange.  This line

   https://salsa.debian.org/r-pkg-team/r-bioc-purecn/-/blob/master/debian/tests/run-unit-test#L23

was added to autopkgtest to remove test_annotateTargets.R which works
perfectly fine for me.  Is there any strange reason why the removal does
not work on some other test environment?

Kind regards

      Andreas.

-- 
http://fam-tille.de



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