[R-pkg-team] Bug#982622: marked as done (r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<< 1.2.1))

Willy nilly bkelco83 at gmail.com
Wed Feb 17 08:41:55 GMT 2021 

close #982622

On Wed, Feb 17, 2021 at 7:09 AM Debian Bug Tracking System <
owner at bugs.debian.org> wrote:

> Your message dated Wed, 17 Feb 2021 07:04:35 +0000
> with message-id <E1lCGt1-00076R-Hp at fasolo.debian.org>
> and subject line Bug#982622: fixed in r-cran-matrixstats 0.58.0-2
> has caused the Debian Bug report #982622,
> regarding r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<<
> 1.2.1)
> to be marked as done.
>
> This means that you claim that the problem has been dealt with.
> If this is not the case it is now your responsibility to reopen the
> Bug report if necessary, and/or fix the problem forthwith.
>
> (NB: If you are a system administrator and have no idea what this
> message is talking about, this may indicate a serious mail system
> misconfiguration somewhere. Please contact owner at bugs.debian.org
> immediately.)
>
>
> --
> 982622: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982622
> Debian Bug Tracking System
> Contact owner at bugs.debian.org with problems
>
>
>
> ---------- Forwarded message ----------
> From: Adrian Bunk <bunk at debian.org>
> To: Debian Bug Tracking System <submit at bugs.debian.org>
> Cc:
> Bcc:
> Date: Fri, 12 Feb 2021 17:21:54 +0200
> Subject: r-cran-matrixstats might need Breaks: r-bioc-matrixgenerics (<<
> 1.2.1)
> Package: r-cran-matrixstats
> Version: 0.58.0-1
> Severity: serious
>
>
> https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-matrixgenerics/10405220/log.gz
>
> ...
> > test_check("MatrixGenerics")
> ══ Failed tests
> ════════════════════════════════════════════════════════════════
> ── Failure (test-api_compatibility.R:89:2): colAvgsPerRowSet works
> ────────────
> `matrixStats_formals` not identical to
> `MatrixGenerics_default_method_formals`.
> Names: 1 string mismatch
> Length mismatch: comparison on first 7 components
> Component 7: 'is.NA' value mismatch: 0 in current 1 in target
> ── Error (test-api_compatibility.R:360:2): colMads works
> ──────────────────────
> Error: Argument 'center' should be of the same length as number of columns
> of 'x': 6 != 8
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::colMads(...) test-api_compatibility.R:360:8
>  2. └─MatrixGenerics::colMads(...)
>  3.   └─MatrixGenerics:::.local(...)
>  4.     └─matrixStats::colMads(...)
> ── Error (test-api_compatibility.R:593:2): colSds works
> ───────────────────────
> Error: Argument 'center' should be of the same length as number of columns
> of 'x': 6 != 8
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::colSds(...) test-api_compatibility.R:593:8
>  2. └─MatrixGenerics::colSds(...)
>  3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
>  4.     └─matrixStats::colSds(...)
>  5.       └─matrixStats::colVars(...)
> ── Error (test-api_compatibility.R:678:2): colVars works
> ──────────────────────
> Error: Argument 'center' should be of the same length as number of columns
> of 'x': 6 != 8
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::colVars(...) test-api_compatibility.R:678:8
>  2. └─MatrixGenerics::colVars(...)
>  3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
>  4.     └─matrixStats::colVars(...)
> ── Error (test-api_compatibility.R:698:2): colWeightedMads works
> ──────────────
> Error: Argument 'center' should be of the same length as number of columns
> of 'x': 1 != 6
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::colWeightedMads(...) test-api_compatibility.R:698:8
>  2. └─MatrixGenerics::colWeightedMads(...)
>  3.   └─matrixStats::colWeightedMads(...)
> ── Failure (test-api_compatibility.R:856:2): rowAvgsPerColSet works
> ───────────
> `matrixStats_formals` not identical to
> `MatrixGenerics_default_method_formals`.
> Names: 1 string mismatch
> Length mismatch: comparison on first 7 components
> Component 7: 'is.NA' value mismatch: 0 in current 1 in target
> ── Error (test-api_compatibility.R:1127:2): rowMads works
> ─────────────────────
> Error: Argument 'center' should be of the same length as number of rows of
> 'x': 16 != 12
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::rowMads(...) test-api_compatibility.R:1127:8
>  2. └─MatrixGenerics::rowMads(...)
>  3.   └─MatrixGenerics:::.local(...)
>  4.     └─matrixStats::rowMads(...)
> ── Error (test-api_compatibility.R:1360:2): rowSds works
> ──────────────────────
> Error: Argument 'center' should be of the same length as number of rows of
> 'x': 16 != 12
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::rowSds(...) test-api_compatibility.R:1360:8
>  2. └─MatrixGenerics::rowSds(...)
>  3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
>  4.     └─matrixStats::rowSds(...)
>  5.       └─matrixStats::rowVars(...)
> ── Error (test-api_compatibility.R:1445:2): rowVars works
> ─────────────────────
> Error: Argument 'center' should be of the same length as number of rows of
> 'x': 16 != 12
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::rowVars(...) test-api_compatibility.R:1445:8
>  2. └─MatrixGenerics::rowVars(...)
>  3.   └─MatrixGenerics:::.local(x, rows, cols, na.rm, center, ...)
>  4.     └─matrixStats::rowVars(...)
> ── Error (test-api_compatibility.R:1466:2): rowWeightedMads works
> ─────────────
> Error: Argument 'center' should be of the same length as number of rows of
> 'x': 1 != 6
> Backtrace:
>     â–ˆ
>  1. ├─MatrixGenerics::rowWeightedMads(...) test-api_compatibility.R:1466:8
>  2. └─MatrixGenerics::rowWeightedMads(...)
>  3.   └─matrixStats::rowWeightedMads(...)
>
> [ FAIL 10 | WARN 0 | SKIP 0 | PASS 300 ]
> Error: Test failures
> Execution halted
> autopkgtest [18:11:11]: test pkg-r-autopkgtest: -----------------------]
> autopkgtest [18:11:11]: test pkg-r-autopkgtest:  - - - - - - - - - -
> results - - - - - - - - - -
> pkg-r-autopkgtest    FAIL non-zero exit status 1
> autopkgtest [18:11:11]: @@@@@@@@@@@@@@@@@@@@ summary
> run-unit-test        FAIL non-zero exit status 1
> pkg-r-autopkgtest    FAIL non-zero exit status 1
>
>
>
> ---------- Forwarded message ----------
> From: Debian FTP Masters <ftpmaster at ftp-master.debian.org>
> To: 982622-close at bugs.debian.org
> Cc:
> Bcc:
> Date: Wed, 17 Feb 2021 07:04:35 +0000
> Subject: Bug#982622: fixed in r-cran-matrixstats 0.58.0-2
> Source: r-cran-matrixstats
> Source-Version: 0.58.0-2
> Done: Andreas Tille <tille at debian.org>
>
> We believe that the bug you reported is fixed in the latest version of
> r-cran-matrixstats, which is due to be installed in the Debian FTP archive.
>
> A summary of the changes between this version and the previous one is
> attached.
>
> Thank you for reporting the bug, which will now be closed.  If you
> have further comments please address them to 982622 at bugs.debian.org,
> and the maintainer will reopen the bug report if appropriate.
>
> Debian distribution maintenance software
> pp.
> Andreas Tille <tille at debian.org> (supplier of updated r-cran-matrixstats
> package)
>
> (This message was generated automatically at their request; if you
> believe that there is a problem with it please contact the archive
> administrators by mailing ftpmaster at ftp-master.debian.org)
>
>
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA512
>
> Format: 1.8
> Date: Wed, 17 Feb 2021 07:36:50 +0100
> Source: r-cran-matrixstats
> Architecture: source
> Version: 0.58.0-2
> Distribution: unstable
> Urgency: medium
> Maintainer: Debian R Packages Maintainers <
> r-pkg-team at alioth-lists.debian.net>
> Changed-By: Andreas Tille <tille at debian.org>
> Closes: 982622
> Changes:
>  r-cran-matrixstats (0.58.0-2) unstable; urgency=medium
>  .
>    * Breaks: r-bioc-matrixgenerics (<< 1.2.1)
>      Closes: #982622
> Checksums-Sha1:
>  326fcc8f8347a76a18a2d48ac91f0bcc77d1ffc1 2154
> r-cran-matrixstats_0.58.0-2.dsc
>  6fc5d8cea8ee715876058c17a2b1feb2ed046ea4 4280
> r-cran-matrixstats_0.58.0-2.debian.tar.xz
>  e6b47a7c429b31d36ad877a4998b368a7b5d9546 10535
> r-cran-matrixstats_0.58.0-2_amd64.buildinfo
> Checksums-Sha256:
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> r-cran-matrixstats_0.58.0-2.dsc
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> r-cran-matrixstats_0.58.0-2.debian.tar.xz
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> r-cran-matrixstats_0.58.0-2_amd64.buildinfo
> Files:
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> r-cran-matrixstats_0.58.0-2.dsc
>  6d346f3c2e53f99e074603a23ccad04f 4280 gnu-r optional
> r-cran-matrixstats_0.58.0-2.debian.tar.xz
>  43c248d374945e53fde85bf999529bfb 10535 gnu-r optional
> r-cran-matrixstats_0.58.0-2_amd64.buildinfo
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