[R-pkg-team] Bug#1005503: [Help] Re: Bug#1005503: cdkr: FTBFS: [javac] /<<PKGBUILDDIR>>/rcdkjar/src/org/guha/rcdk/util/Misc.java:14: error: package org.openscience.cdk.inchi does not exist

[Andreas Tille]

Control: tags -1 help

Hi CDK uploaders,

I noticed that a new version (2.7.1) of cdk was uploaded which is
possibly responsible for the issue reported below.  Before I'll contact
cdkr authors I want to make sure that its not a Debian packaging issue
which is causing the problem below.

Kind regards

     Andreas.

Am Sun, Feb 13, 2022 at 08:00:22AM +0100 schrieb Lucas Nussbaum:
> Source: cdkr
> Version: 3.6.0+dfsg-1
> Severity: serious
> Justification: FTBFS
> Tags: bookworm sid ftbfs
> User: lucas at debian.org
> Usertags: ftbfs-20220212 ftbfs-bookworm
> 
> Hi,
> 
> During a rebuild of all packages in sid, your package failed to build
> on amd64.
> 
> 
> Relevant part (hopefully):
> > make[1]: Entering directory '/<<PKGBUILDDIR>>'
> > ant -buildfile rcdkjar/build.xml
> > Buildfile: /<<PKGBUILDDIR>>/rcdkjar/build.xml
> > 
> > compile:
> >     [mkdir] Created dir: /<<PKGBUILDDIR>>/rcdkjar/classes
> >     [javac] Compiling 18 source files to /<<PKGBUILDDIR>>/rcdkjar/classes
> >     [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
> >     [javac] /<<PKGBUILDDIR>>/rcdkjar/src/org/guha/rcdk/util/Misc.java:14: error: package org.openscience.cdk.inchi does not exist
> >     [javac] import org.openscience.cdk.inchi.InChIGenerator;
> >     [javac]                                 ^
> >     [javac] /<<PKGBUILDDIR>>/rcdkjar/src/org/guha/rcdk/util/Misc.java:15: error: package org.openscience.cdk.inchi does not exist
> >     [javac] import org.openscience.cdk.inchi.InChIGeneratorFactory;
> >     [javac]                                 ^
> >     [javac] Note: Some input files use or override a deprecated API.
> >     [javac] Note: Recompile with -Xlint:deprecation for details.
> >     [javac] 2 errors
> >     [javac] 1 warning
> > 
> > BUILD FAILED
> > /<<PKGBUILDDIR>>/rcdkjar/build.xml:26: Compile failed; see the compiler error output for details.
> > 
> > Total time: 1 second
> > make[1]: *** [debian/rules:11: override_dh_auto_build] Error 1
> 
> 
> The full build log is available from:
> http://qa-logs.debian.net/2022/02/12/cdkr_3.6.0+dfsg-1_unstable.log
> 
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
> 
> If you reassign this bug to another package, please marking it as 'affects'-ing
> this package. See https://www.debian.org/Bugs/server-control#affects
> 
> If you fail to reproduce this, please provide a build log and diff it with mine
> so that we can identify if something relevant changed in the meantime.
> 
> _______________________________________________
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> R-pkg-team at alioth-lists.debian.net
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> 

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