[R-pkg-team] Bug#1039642: r-cran-arsenal: autopkgtest failure with r-base (4.3.1-1)

[Bas Couwenberg]

Source: r-cran-arsenal
Version: 3.6.3-1
Severity: serious
Justification: autopkgtest failure

Dear Maintainer,

The autopkgtest of your package fails with r-base (4.3.1-1):

 48s [ FAIL 6 | WARN 0 | SKIP 12 | PASS 471 ]
 48s 
 48s ══ Skipped tests ═══════════════════════════════════════════════════════════════
 48s • On CRAN (12)
 48s 
 48s ══ Failed tests ════════════════════════════════════════════════════════════════
 48s ── Failure ('test_modelsum.R:125'): offset() works ─────────────────────────────
 48s `summary(...)` threw an error.
 48s Message: DLL requires the use of native symbols
 48s Class:   simpleError/error/condition
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_error(...) at test_modelsum.R:125:2
 48s   2. │ └─testthat:::quasi_capture(...)
 48s   3. │   ├─testthat (local) .capture(...)
 48s   4. │   │ └─base::withCallingHandlers(...)
 48s   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
 48s   6. ├─base::summary(...)
 48s   7. └─arsenal::modelsum(...)
 48s   8.   └─arsenal:::modelsum_guts(...)
 48s   9.     ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value = `<lgl>`)
 48s  10.     └─tibble:::`[<-.tbl_df`(...)
 48s  11.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 48s  12.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  13.           ├─base::withCallingHandlers(...)
 48s  14.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:240'): ordinal works ────────────────────────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:240:4
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(...)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:286'): negbin works ─────────────────────────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:286:4
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value = `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:386'): 08/01/2017: Beth Atkinson's subset problem ───
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:386:2
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffORTidy$term == "Intercept", -1, value = `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:680'): relrisk works (#279) ─────────────────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:680:2
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffRRTidy$term == "Intercept", -1, value = `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s ── Error ('test_modelsum.R:695'): Nevents works for binomial (#325) ────────────
 48s Error in `vectbl_assign(x[[j]], i, recycled_value[[j]])`: DLL requires the use of native symbols
 48s Backtrace:
 48s      ▆
 48s   1. ├─testthat::expect_identical(...) at test_modelsum.R:695:2
 48s   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
 48s   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
 48s   4. ├─arsenal:::capture.kable(...)
 48s   5. │ └─utils::capture.output(x) at tests/testthat/helper-script.R:4:2
 48s   6. │   └─base::withVisible(...elt(i))
 48s   7. ├─base::summary(...)
 48s   8. └─arsenal::modelsum(...)
 48s   9.   └─arsenal:::modelsum_guts(...)
 48s  10.     ├─base::`[<-`(`*tmp*`, coeffORTidy$term == "Intercept", -1, value = `<lgl>`)
 48s  11.     └─tibble:::`[<-.tbl_df`(...)
 48s  12.       └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))
 48s  13.         └─tibble:::tbl_subassign_row(xj, i, value, i_arg, value_arg)
 48s  14.           ├─base::withCallingHandlers(...)
 48s  15.           └─tibble:::vectbl_assign(x[[j]], i, recycled_value[[j]])
 48s 
 48s [ FAIL 6 | WARN 0 | SKIP 12 | PASS 471 ]

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-arsenal/34918505/log.gz